View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_43 (Length: 305)
Name: NF20242_low_43
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_43 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 49273158 - 49272854
Alignment:
| Q |
1 |
tttttgctttatgttggccatttttaactctcctctctcaataaaagattacaattgtatcgatcattcagcaaagaaaattacagtagaggnnnnnnng |
100 |
Q |
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| T |
49273158 |
tttttgctttatgttggccatttttaactctcctctctcaataaatgattacaattgtatcgatcattcagcaaagaaaattacagtagaggaaaaaaag |
49273059 |
T |
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| Q |
101 |
ataaaccgaggtacctaaatattcagagaagttacaaattcaataaaaagtccaaaaatttgatccgataaatatttagtatcaagnnnnnnnnnnnnnn |
200 |
Q |
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| T |
49273058 |
ataaaccgaggtacctaaatattcagagaagttacaaattcaataaaaagtccaaaaatttgatccgataaatatttagtatcaagaaaacaaaaacaaa |
49272959 |
T |
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| Q |
201 |
nnnnnnnncattttacattctcacttggctcaaattcatctccgattgaaattgaaaagatgaactcattcaatttcttttacatcatcataatatgata |
300 |
Q |
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| T |
49272958 |
aaaacaaacattttacattctcacttggctcaaattcatctccgattgaaattgaaaagatgaactcattcaatttcttttacatcatcataatatgata |
49272859 |
T |
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| Q |
301 |
aaagt |
305 |
Q |
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||||| |
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| T |
49272858 |
aaagt |
49272854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 302
Target Start/End: Complemental strand, 49270880 - 49270788
Alignment:
| Q |
209 |
cattttacattctcacttggctcaaattcatctccgattgaaattgaaaagatgaactcattcaatttcttttacatcatcataatatgataaa |
302 |
Q |
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| T |
49270880 |
catttttcattctcacttggctcatgttcatttccaatttaa-ttgaagagatgaaatcattcaatttcttttacatcatcatgatatgataaa |
49270788 |
T |
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