View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20242_low_44 (Length: 303)
Name: NF20242_low_44
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 3576200 - 3575935
Alignment:
| Q |
20 |
tagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacagcccatatagcaaggatgc |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3576200 |
tagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggacagcccatatagcaaggatac |
3576101 |
T |
|
| Q |
120 |
tttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacagcctcgccgaatttcac |
219 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576100 |
tttgtgcgtggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacagcctcgccgaatttcac |
3576001 |
T |
|
| Q |
220 |
accattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576000 |
accattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtg |
3575935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 3585016 - 3585280
Alignment:
| Q |
18 |
gatagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacagcccatatagcaaggat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3585016 |
gatagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccttcaacagctcccattaagataacttggacagcccaaatagcaaggat |
3585115 |
T |
|
| Q |
118 |
gctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacagcctcgccgaatttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
3585116 |
gctttgtgcatggactaggcttgggttacccaagtagtcaagtccaccctcactaaagatttgagatcctgccttaaaccacacagcctcaccgaatttc |
3585215 |
T |
|
| Q |
218 |
acaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctact |
282 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||| || || || ||||||||||||||||| |
|
|
| T |
3585216 |
acaccattgcgagccaagagttctgggaagacacatcctaaggcacccaacatagcccatctact |
3585280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 3564221 - 3563956
Alignment:
| Q |
20 |
tagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacagcccatatagcaaggatgc |
119 |
Q |
| |
|
||||||||||| || |||||||| ||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3564221 |
tagagtgggtcaaccacctcaccgagaggtccaccagcaatacggtaaccctcaacagcacccattaagataacttggacagcccatatagcaaggatgc |
3564122 |
T |
|
| Q |
120 |
tttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacagcctcgccgaatttcac |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || |
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| T |
3564121 |
tttgtgcatggactagacttgggttacccaagtagtcaagcccaccctcactaaaaatttgggatcctgccttgaaccatacagcctcgccgaatttgac |
3564022 |
T |
|
| Q |
220 |
accattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtg |
285 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| || || |||||||||||||||||||| |
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|
| T |
3564021 |
accattgcgagataagagctcagggaagacacatcccaaggcacccaacatagcccatctactgtg |
3563956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 3572916 - 3572651
Alignment:
| Q |
20 |
tagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacagcccatatagcaaggatgc |
119 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| | |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3572916 |
tagagtgggtcgacaacctcaccgagaggtccacctgcaatacgataaccctcaacagcacccattaagataacttggacagcccatatagcaaggatgc |
3572817 |
T |
|
| Q |
120 |
tttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacagcctcgccgaatttcac |
219 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |
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|
| T |
3572816 |
tttgtgcatggactagacttggatttcccaagtagtcaagtccaccctcactaaagatttgagatcctgccttgaaccacacggcctcaccgaatttaac |
3572717 |
T |
|
| Q |
220 |
accattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtg |
285 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
3572716 |
accattgcgagccaagagctcagggaagacacatcccaaggctcccaacatagcccacctactgtg |
3572651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 3569869 - 3569604
Alignment:
| Q |
20 |
tagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacagcccatatagcaaggatgc |
119 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||| | |||||||||||||| || || || |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3569869 |
tagagtggatcgactacctcgcctagaggtccaccagcaatacggtaaccctccacggcgcccattaagataacttggactgcccatatagcaaggatgc |
3569770 |
T |
|
| Q |
120 |
tttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacagcctcgccgaatttcac |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
3569769 |
tttgtgcatggactagacttgggttacccaagtagtcaagtccaccctcactaaagatttgggatcctgccttgaaccacacggcctcaccgaattgtac |
3569670 |
T |
|
| Q |
220 |
accattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtg |
285 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
3569669 |
accattgcgagataagagctcagggaagacacatcccaaggcacccaacatagcccatctactgtg |
3569604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 3578056 - 3577894
Alignment:
| Q |
20 |
tagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacagcccatatagcaaggatgc |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |||| ||||||||||||| |
|
|
| T |
3578056 |
tagagtggatcgactacctcaccaagaggtccatcggcaatacggtaaccctcaacagctcccattaagatagctaggacaacccaaatagcaaggatgc |
3577957 |
T |
|
| Q |
120 |
tttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgag |
182 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
3577956 |
tttgtgcgtggactaggcttgggttacccaagtagtcaagccctccatcactaaagatttgag |
3577894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 13276147 - 13275968
Alignment:
| Q |
20 |
tagagtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacagcccatatagcaaggatgc |
119 |
Q |
| |
|
||||||||||| | |||||||||||||||||| | |||||||||||||| |||||||| ||||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
13276147 |
tagagtgggtcaatcacctcaccaagaggtccaccagcaatacggtaaccctcaacagcacccatcaagataacttggcaggcccatatggcaaggatgc |
13276048 |
T |
|
| Q |
120 |
tttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
199 |
Q |
| |
|
|||||||||| || || |||||||| ||||| ||||| || || ||||||||||||||||| || | |||||||||||| |
|
|
| T |
13276047 |
tttgtgcatgtacaagacttgggttgcccaaatagtctagcccaccctcactaaagatttgggacctggccttgaaccac |
13275968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 23 - 282
Target Start/End: Complemental strand, 38357233 - 38356974
Alignment:
| Q |
23 |
agtgggtcgactacctcaccaagaggtccatcggcaatacggtaaccttcaacagctcccattaagataacttggacagcccatatagcaaggatgcttt |
122 |
Q |
| |
|
|||||||| || |||||||||||||| ||| | ||||||||||||||||||||||| ||||| |||||||||||| |||||| || ||||| ||||| | |
|
|
| T |
38357233 |
agtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaacagcgcccatcaagataacttgggtagcccagatggcaagaatgctct |
38357134 |
T |
|
| Q |
123 |
gtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacagcctcgccgaatttcacacc |
222 |
Q |
| |
|
| |||||||| | |||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
38357133 |
gagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaaccatacagcctcaccgaatttaacacc |
38357034 |
T |
|
| Q |
223 |
attgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctact |
282 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
38357033 |
attgcgagacaaaagctctgggaaaacacatcccaaggctcccaacatagcccacctact |
38356974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 42602953 - 42602831
Alignment:
| Q |
100 |
agcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
199 |
Q |
| |
|
|||||| || ||||| ||||| || ||||||| ||| ||||||| ||||| |||||||| || |||||| ||||| || | || ||||| |||||| |
|
|
| T |
42602953 |
agcccagattgcaagaatgctctgagcatggatcaggtttgggttgcccaaatagtcaaggccaccctcagagaagatctgggcaccagccttaaaccac |
42602854 |
T |
|
| Q |
200 |
acagcctcgccgaatttcacacc |
222 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
42602853 |
acagcctcaccgaatttaacacc |
42602831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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