View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_45 (Length: 303)
Name: NF20242_low_45
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 2793520 - 2793789
Alignment:
| Q |
17 |
acttgtgttctctttatcggtgaggtacgtgattttttctctctttgtaactcactggtttactcttcaacatttttatcccattaaattttatgacttt |
116 |
Q |
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| T |
2793520 |
acttgtgttctctttatcggtgaggtacgtgattttttctctctttgtaactcactggtttactcttcaacatttttatcccattaaattttatgacttt |
2793619 |
T |
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| Q |
117 |
tttacgtagcaatgataacaatttgtgtctttgatttcagattattcctcaagcaatttgtagtagaaatggtcttgccgtcggtgcttattttgcatgg |
216 |
Q |
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| T |
2793620 |
tttaccta---------acaatttgtgtctttgatttcagattattccacaagcaatttgtagtagaaatggtcttgccgtcggtgcttattttgcatgg |
2793710 |
T |
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| Q |
217 |
cttgtgcggatattaatgatcatatgttatccgatttcttgtccggttggaaaggtattttgcatggttattttcatct |
295 |
Q |
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| T |
2793711 |
cttgtgcggatattaatgatcatatgttatccgatttcttgtccggttggaaaggtattttgcatggttattttcatct |
2793789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 48668210 - 48668336
Alignment:
| Q |
148 |
tgatttcagattattcctcaagcaatttgtagtagaaatggtcttgccgtcggtgcttattttgcatggcttgtgcggatattaatgatcatatgttatc |
247 |
Q |
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| T |
48668210 |
tgatttcaggttattccgcaagcaatttgtagtagatatggtcttgccgtaggtgctaactttgcatggcttgtgcggatcttaatggttatatgttatc |
48668309 |
T |
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| Q |
248 |
cgatttcttgtccggttggaaaggtat |
274 |
Q |
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| T |
48668310 |
cagtttcctacccagttggaaaggtat |
48668336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 16389011 - 16389127
Alignment:
| Q |
158 |
ttattcctcaagcaatttgtagtagaaatggtcttgccgtcggtgcttattttgcatggcttgtgcggatattaatgatcatatgttatccgatttcttg |
257 |
Q |
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||||||| |||||||||||||||||| |||||||||| || ||||| | ||| ||||||||||||| || |||||||| ||||| || || |||| | |
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| T |
16389011 |
ttattccacaagcaatttgtagtagatatggtcttgctgtaggtgccaacttttcatggcttgtgcgtattttaatgattatatgctaccctctttcgta |
16389110 |
T |
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| Q |
258 |
tccggttggaaaggtat |
274 |
Q |
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| T |
16389111 |
tccggttggaaaggtat |
16389127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 7579902 - 7579867
Alignment:
| Q |
148 |
tgatttcagattattcctcaagcaatttgtagtaga |
183 |
Q |
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| T |
7579902 |
tgatttcaggttattcctcaagcaatttgtagtaga |
7579867 |
T |
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