View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_48 (Length: 297)
Name: NF20242_low_48
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 6642101 - 6642370
Alignment:
| Q |
11 |
ttattcttatatgggatatgggaaacaaattcttaatccgttcaattaggagtactaaccattaagtaatcctccaccaaaccatacannnnnnnnncct |
110 |
Q |
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| T |
6642101 |
ttattcttatatgggatatgggaaacaaattcttaatccgttcaattaggagtactaaccattaagtaatcctccaccaaaccatacatttttttt-cct |
6642199 |
T |
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| Q |
111 |
aatttataatttagaatgtgagacatgagatccttaaattagtactctaattattattactaatagcacttacgatccttgttttatacatcttaaaatt |
210 |
Q |
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| T |
6642200 |
aatttataatttagaatgtgagacatgagatccttaaattagtactctaattattattactaatagcacttacgatccttgttttatacatcttaaaatt |
6642299 |
T |
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| Q |
211 |
gagttaataaacgtgaaaggcaagacgtagtttgcaagtaatttgacgttttagctataggagaaaaaagc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6642300 |
gagttaataaacgtgaaaggcaagacgtagtttgcaagtaatttgacgttttagctataggagaaaaaagc |
6642370 |
T |
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