View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20242_low_49 (Length: 296)
Name: NF20242_low_49
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 36684633 - 36684920
Alignment:
| Q |
1 |
acaaagatgctatttagatagagtcaacaaggtaatgagatgaagggtaacacttttttatacaacccaaatcctttaccacaatttcattgggaagcta |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684633 |
acaaatatgctatttagatagagtcaacaaggtaatgagatgaagggtaacacttttttatacaacccaaatcctttaccacaatttcattgggaagcta |
36684732 |
T |
|
| Q |
101 |
gatggctttggactgttcgattaagagagaaattttttaagattatgagagatcctctataatctaacggggtcttctgcatcgtaaagccaaatgtaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684733 |
gatggctttggactgttcgattaagagagaaaatttttaagattatgagagatcctctataatctaacggggtcttctgcatcgtaaagccaaatgtaga |
36684832 |
T |
|
| Q |
201 |
gaatttaatttgtgttttatagacttttttaaatcttcttttaatatcgatctaaaccatcacggctcattaagttagtccctttgct |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36684833 |
gaatttaatttgtgttttatagacttttttaaatcttcttttaatatcgatctaaactatcacggctcattaagttagtccctttgct |
36684920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University