View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20242_low_5 (Length: 724)

Name: NF20242_low_5
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20242_low_5
NF20242_low_5
[»] chr6 (2 HSPs)
chr6 (22-613)||(10796950-10797541)
chr6 (605-715)||(10796293-10796403)
[»] chr4 (6 HSPs)
chr4 (22-613)||(50078540-50079131)
chr4 (193-450)||(50070300-50070557)
chr4 (605-715)||(50077883-50077993)
chr4 (605-715)||(49106913-49107023)
chr4 (605-689)||(50112144-50112228)
chr4 (135-168)||(50070604-50070637)
[»] chr2 (6 HSPs)
chr2 (357-428)||(13501504-13501575)
chr2 (618-685)||(43849695-43849762)
chr2 (357-428)||(13515307-13515378)
chr2 (382-422)||(13541874-13541914)
chr2 (357-422)||(13485788-13485853)
chr2 (357-422)||(13509549-13509614)


Alignment Details
Target: chr6 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 22 - 613
Target Start/End: Complemental strand, 10797541 - 10796950
Alignment:
Q  22 ccggcaccatcaagaagctcactttcgttgagggttagtaaacacattttctatacaaaa-gtaccgtatgnnnnnnnatgttattgattaaccaaacat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||       ||||||||||| || ||| |||    
T  10797541 ccggcaccatcaagaagctcactttcgttgagggttagtaaacacattttctatacaaaatgtatcatatgtttttttatgttattgatgaagcaa-cat 10797443  T
Q  121 atatgtctgcaggaggacaaaccttgtatgtgttgcaccaaattgatgcaattgatgaagcaaacttgggatataactatagtatagttggaggagtcgg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10797442 atatgtctgcaggaggacaaaccttgtatgtgttgcaccaaattgatgcaattgatgaagcaaacttgggatataactatagtatagttggaggagtcgg 10797343  T
Q  221 gttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggcgcaaatggaggatctattggaaagacgaccgttaaataccaaaccaaa 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  10797342 gttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctgttggaaagacgacagttaaataccaaaccaaa 10797243  T
Q  321 ggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaatt 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10797242 ggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaatt 10797143  T
Q  421 acaactaatccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgtcagtttcttttc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10797142 acaactaatccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgtcagtttcttttc 10797043  T
Q  521 ttacttttgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaatgaaatcactatccaagtaata 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10797042 ttacttttgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaatgaaatcactatccaaataata 10796950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 605 - 715
Target Start/End: Complemental strand, 10796403 - 10796293
Alignment:
Q  605 caagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttttcaaactcaaaactcata 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10796403 caagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttttcaaactcaaaactcata 10796304  T
Q  705 gttagtataat 715  Q
    |||||||||||    
T  10796303 gttagtataat 10796293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 22 - 613
Target Start/End: Complemental strand, 50079131 - 50078540
Alignment:
Q  22 ccggcaccatcaagaagctcactttcgttgagggttagtaaacacattttctatacaaaa-gtaccgtatgnnnnnnnatgttattgattaaccaaacat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||       ||||||||||| || ||| |||    
T  50079131 ccggcaccatcaagaagctcactttcgttgagggttagtaaacacattttctatacaaaatgtatcatatgtttttttatgttattgatgaagcaa-cat 50079033  T
Q  121 atatgtctgcaggaggacaaaccttgtatgtgttgcaccaaattgatgcaattgatgaagcaaacttgggatataactatagtatagttggaggagtcgg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50079032 atatgtctgcaggaggacaaaccttgtatgtgttgcaccaaattgatgcaattgatgaagcaaacttgggatataactatagtatagttggaggagtcgg 50078933  T
Q  221 gttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggcgcaaatggaggatctattggaaagacgaccgttaaataccaaaccaaa 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  50078932 gttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctgttggaaagacgacagttaaataccaaaccaaa 50078833  T
Q  321 ggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaatt 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50078832 ggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaatt 50078733  T
Q  421 acaactaatccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgtcagtttcttttc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50078732 acaactaatccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgtcagtttcttttc 50078633  T
Q  521 ttacttttgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaatgaaatcactatccaagtaata 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50078632 ttacttttgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaatgaaatcactatccaaataata 50078540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 193 - 450
Target Start/End: Complemental strand, 50070557 - 50070300
Alignment:
Q  193 ataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggcgcaaatggaggatctattgg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  50070557 ataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctattgg 50070458  T
Q  293 aaagacgaccgttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccatt 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50070457 aaagacgaccgttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccatt 50070358  T
Q  393 gagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagt 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50070357 gagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagt 50070300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 605 - 715
Target Start/End: Complemental strand, 50077993 - 50077883
Alignment:
Q  605 caagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttttcaaactcaaaactcata 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50077993 caagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttttcaaactcaaaactcata 50077894  T
Q  705 gttagtataat 715  Q
    |||||||||||    
T  50077893 gttagtataat 50077883  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 605 - 715
Target Start/End: Complemental strand, 49107023 - 49106913
Alignment:
Q  605 caagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttttcaaactcaaaactcata 704  Q
    |||||||  ||||||||||||||||||||| || ||||||| |||||| |||||||| ||| |||| ||||||||| |||||||||||||||||||||||    
T  49107023 caagtaacggagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttttcaaactcaaaactcata 49106924  T
Q  705 gttagtataat 715  Q
    |||||||||||    
T  49106923 gttagtataat 49106913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 605 - 689
Target Start/End: Original strand, 50112144 - 50112228
Alignment:
Q  605 caagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttttca 689  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||||||||||| ||||    
T  50112144 caagtaaaagagaattttgtagcataaaagaatcacaagttatgaagtgaattcccaaattgtgaacgtagccttaaactcttca 50112228  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 50070637 - 50070604
Alignment:
Q  135 ggacaaaccttgtatgtgttgcaccaaattgatg 168  Q
    ||||||||||||||||||||||||||||||||||    
T  50070637 ggacaaaccttgtatgtgttgcaccaaattgatg 50070604  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 357 - 428
Target Start/End: Original strand, 13501504 - 13501575
Alignment:
Q  357 ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa 428  Q
    |||||||| |||||||||| ||||||||||||| ||||||||||   |||||| |||||| |||||||||||    
T  13501504 ggcaaagctaagggtgatggtcttttcaaggcccttgagggttactgtttggctaatcctgattacaactaa 13501575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 618 - 685
Target Start/End: Original strand, 43849695 - 43849762
Alignment:
Q  618 attttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaactt 685  Q
    |||||||||  |||||||||||||| || ||||||||||| ||||||| ||||||||||||| |||||    
T  43849695 attttgtagtgtaaaagaatcacaaattatgaagtgaatttcctgattgtgaacgtagccttcaactt 43849762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 357 - 428
Target Start/End: Original strand, 13515307 - 13515378
Alignment:
Q  357 ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa 428  Q
    |||||||| |||||||||| |||||||||||| || ||||||||   |||||| |||||| |||||||||||    
T  13515307 ggcaaagctaagggtgatggtcttttcaaggctatagagggttactgtttggctaatcctgattacaactaa 13515378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 13541874 - 13541914
Alignment:
Q  382 tcaaggccattgagggttatgttttggccaatcctaattac 422  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  13541874 tcaaggccattgagggttatgttttggcaaaccctaattac 13541914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 422
Target Start/End: Original strand, 13485788 - 13485853
Alignment:
Q  357 ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac 422  Q
    |||||||| | |||||||| ||||||||||||  |||| ||||| |||||||| |||||| |||||    
T  13485788 ggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctgattac 13485853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 422
Target Start/End: Original strand, 13509549 - 13509614
Alignment:
Q  357 ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac 422  Q
    |||||||| | |||||||| ||||||||| ||  |||| |||||||||||||| |||||| |||||    
T  13509549 ggcaaagctaggggtgatggtcttttcaaagctcttgaaggttatgttttggcaaatcctgattac 13509614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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