View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_52 (Length: 279)
Name: NF20242_low_52
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 43532630 - 43532367
Alignment:
| Q |
1 |
cttgaatcatctcgactttctgttgtatcttgaactatttctggttatcttctgattacctcatatgattcaaaccaacataatggagttccccatttct |
100 |
Q |
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| T |
43532630 |
cttgaatcatctcgactttctgttgtatcttgaactatttctggttatcttctgattacctcatatgattcaaaccaacataatggagttccccatttct |
43532531 |
T |
|
| Q |
101 |
atccattcaaaatcatcctaatttgatcatacaaataatatgaaggcttctaaggaaaactcaaaatcaaatnnnnnnncattaggccacattcaacag- |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43532530 |
atccattcaaaatcatcctaatttgatcatacaaataatatgaaggcttctaaggaaaactcaaaatcaaataaaaaaacattaggccacattcaacagt |
43532431 |
T |
|
| Q |
200 |
nnnnnnnatgagtaagaatcgaacgctgtttttcagaattagcaacacttataagttatataca |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532430 |
tttttttatgagtaagaatcgaacgctgtttttcagaattagcaacacttataagttatataca |
43532367 |
T |
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