View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20242_low_53 (Length: 277)

Name: NF20242_low_53
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20242_low_53
NF20242_low_53
[»] chr3 (4 HSPs)
chr3 (32-257)||(6077813-6078034)
chr3 (18-186)||(22157705-22157878)
chr3 (92-237)||(9765844-9765983)
chr3 (10-57)||(9765992-9766039)
[»] chr6 (1 HSPs)
chr6 (10-142)||(13550183-13550315)
[»] chr7 (3 HSPs)
chr7 (10-186)||(9332757-9332937)
chr7 (138-239)||(27272975-27273074)
chr7 (132-164)||(9333980-9334012)
[»] chr8 (2 HSPs)
chr8 (20-164)||(22647851-22647995)
chr8 (92-237)||(43651527-43651666)
[»] chr5 (2 HSPs)
chr5 (20-164)||(27030060-27030204)
chr5 (92-237)||(21114736-21114875)
[»] scaffold0755 (1 HSPs)
scaffold0755 (20-164)||(5443-5584)
[»] chr2 (1 HSPs)
chr2 (88-218)||(24863544-24863669)
[»] chr4 (4 HSPs)
chr4 (10-83)||(51862210-51862283)
chr4 (107-186)||(51862135-51862214)
chr4 (18-83)||(39482310-39482375)
chr4 (107-186)||(39482371-39482450)
[»] scaffold0039 (1 HSPs)
scaffold0039 (22-203)||(81502-81675)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 32 - 257
Target Start/End: Complemental strand, 6078034 - 6077813
Alignment:
Q  32 attcatactgaaatcgaaattaaaaataagaaatgtattatgaaagtatgtacccattgttgtcaaatggatgaaatgtatatttctctttgttctaaaa 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||  ||||    
T  6078034 attcatactgaaatcgaaattaaaaataagaaatgtattatgaaagtatgtaccc--tattgtcaaatggatgaaatgtatatttctctttgtt--aaaa 6077939  T
Q  132 taaatggatgataaaagggataagaaatatagaaacttggtgaaaccctgtcatgctttcctctctatctttggatgaaacgtctctcttgcaatagtaa 231  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  6077938 taaatggatgataaaagggaaaagaaatatagaaacttggtgaaaccctgtcatgctttcctctttatctttggatgaaacgtctctcttgcaattgtaa 6077839  T
Q  232 tttggaacatctcccattttccttcg 257  Q
    |||||||| |||| ||||||| ||||    
T  6077838 tttggaacgtctctcattttctttcg 6077813  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 22157705 - 22157878
Alignment:
Q  18 caactaaattatccattcatactgaaatcgaaattaaaaataagaaatgtattatgaaagtatgtacc-----cattgttgtcaaatggatgaaatgtat 112  Q
    ||||||||| |||||||||||||||||| |||||| ||| |||||| ||||  ||||||||||||| |     | ||||| | ||||| | |||||||||    
T  22157705 caactaaatcatccattcatactgaaattgaaattgaaattaagaagtgtaagatgaaagtatgtatctttctctttgttctgaaatgaaagaaatgtat 22157804  T
Q  113 atttctctttgttctaaaataaatggatgataaaagggataagaaatatagaaacttggtgaaaccctgtcatg 186  Q
     |||||||||||||| |||| ||||||||||||||| ||||| |||||| || | ||||||||| |||||||||    
T  22157805 ctttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaatcctgtcatg 22157878  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 237
Target Start/End: Complemental strand, 9765983 - 9765844
Alignment:
Q  92 tgtcaaatggatgaaatgtatatttctctttgttctaaaataaatggatgataaaagggataagaaatatagaaacttggtgaaaccctgtcatgctttc 191  Q
    ||||||||||||||||||||| |  ||||||||||| |||| | ||||| ||| ||| |||||||||||||||   | ||||||||| ||||||| ||||    
T  9765983 tgtcaaatggatgaaatgtatct--ctctttgttctgaaatcattggatcatagaagagataagaaatatagatcttcggtgaaacc-tgtcatg-tttc 9765888  T
Q  192 ctctctatctttggatgaaacgtctctcttgcaatagtaatttgga 237  Q
    ||||||||||||||||||||  | ||||||||||| ||||||||||    
T  9765887 ctctctatctttggatgaaa--tgtctcttgcaattgtaatttgga 9765844  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 9766039 - 9765992
Alignment:
Q  10 aaaatcatcaactaaattatccattcatactgaaatcgaaattaaaaa 57  Q
    |||||||  |||||||||||||||||||||| |||| |||||||||||    
T  9766039 aaaatcacaaactaaattatccattcatactaaaattgaaattaaaaa 9765992  T

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Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 13550183 - 13550315
Alignment:
Q  10 aaaatcatcaactaaattatccattcatactgaaatcgaaattaaaaataagaaatgtattatgaaagtatgtacccattgttgtcaaatggatgaaatg 109  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||    
T  13550183 aaaatcaccaactaaattatccattcatactgaaattgaaataaaaaataagaagtgtatgatgaaagtatgcacccattgttgtcaattggatgaaatg 13550282  T
Q  110 tatatttctctttgttctaaaataaatggatga 142  Q
    |||||||||||||||||||||||||||||||||    
T  13550283 tatatttctctttgttctaaaataaatggatga 13550315  T

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Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 9332757 - 9332937
Alignment:
Q  10 aaaatcatcaactaaattatccattcatactgaaatcgaaattaaaaataagaaatgtattatgaaagtatgta----cccattgttgtcaaatggatga 105  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||||  |||||||||||||    | | ||||| | ||||||| ||    
T  9332757 aaaatcaccaactaaatcatccattcatactgaaattgaaattaaaaataagaagtgtaagatgaaagtatgtattttctctttgttctgaaatggaaga 9332856  T
Q  106 aatgtatatttctctttgttctaaaataaatggatgataaaagggataagaaatatagaaacttggtgaaaccctgtcatg 186  Q
    ||||||| |||||||||||||| |||| ||||||||||||||| ||||| |||||| || | |||||||||||||||||||    
T  9332857 aatgtatttttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaaccctgtcatg 9332937  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 27272975 - 27273074
Alignment:
Q  138 gatgataaaagggataagaaatatagaaacttggtgaaaccctgtcatgctttcctctctatctttggatgaaacgtctctcttgcaatagtaatttgga 237  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| ||| ||||| |||||||||||  ||||||||||| ||||||||||    
T  27272975 gatgataaaagggataagaaagatagaaacttgatgaaaccctgtcatgttttcgtctttatctgtggatgaaacg--tctcttgcaattgtaatttgga 27273072  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 9333980 - 9334012
Alignment:
Q  132 taaatggatgataaaagggataagaaatataga 164  Q
    ||||||||||||||||| |||||||||||||||    
T  9333980 taaatggatgataaaagagataagaaatataga 9334012  T

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Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 22647851 - 22647995
Alignment:
Q  20 actaaattatccattcatactgaaatcgaaattaaaaataagaaatgtattatgaaagtatgtacccattgttgtcaaatggatgaaatgtatatttctc 119  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| ||||  |||||||||||||||  |||||  || ||||||||||||||| ||| ||    
T  22647851 actaaataatccattcatactgaaattgaaattaaaaataagaagtgtaagatgaaagtatgtacctgttgttaccagatggatgaaatgtatctttatc 22647950  T
Q  120 tttgttctaaaataaatggatgataaaagggataagaaatataga 164  Q
    | |||||| |||| ||||||||||||||| |||||||||||||||    
T  22647951 tatgttctgaaatcaatggatgataaaagagataagaaatataga 22647995  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 92 - 237
Target Start/End: Original strand, 43651527 - 43651666
Alignment:
Q  92 tgtcaaatggatgaaatgtatatttctctttgttctaaaataaatggatgataaaagggataagaaatatagaaacttggtgaaaccctgtcatgctttc 191  Q
    |||||||| ||||||||  |||| |||||||||| | |||| | ||||| ||||||| |||||||||||||||   | ||||||| ||||||||| ||||    
T  43651527 tgtcaaatagatgaaat--atatctctctttgttatgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatg-tttc 43651622  T
Q  192 ctctctatctttggatgaaacgtctctcttgcaatagtaatttgga 237  Q
    ||||||||||||||||||||  | ||||||||||| ||||||||||    
T  43651623 ctctctatctttggatgaaa--tgtctcttgcaattgtaatttgga 43651666  T

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Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 27030204 - 27030060
Alignment:
Q  20 actaaattatccattcatactgaaatcgaaattaaaaataagaaatgtattatgaaagtatgtacccattgttgtcaaatggatgaaatgtatatttctc 119  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||| ||||  |||||||||||||||  |||||   | ||||||||||||||| ||||||    
T  27030204 actaaataatccattcatactaaaattgaaattaaaaataagaagtgtaagatgaaagtatgtacctgttgttactagatggatgaaatgtatctttctc 27030105  T
Q  120 tttgttctaaaataaatggatgataaaagggataagaaatataga 164  Q
    | |||||| |||| ||||||||||||||| |||||||||||||||    
T  27030104 tatgttctgaaatcaatggatgataaaagagataagaaatataga 27030060  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 237
Target Start/End: Original strand, 21114736 - 21114875
Alignment:
Q  92 tgtcaaatggatgaaatgtatatttctctttgttctaaaataaatggatgataaaagggataagaaatatagaaacttggtgaaaccctgtcatgctttc 191  Q
    |||||||| |||||||||||| |  ||||||||||| |||| | ||||| ||||||| |||||||||||||||   | ||||||| ||||||||| ||||    
T  21114736 tgtcaaatagatgaaatgtatct--ctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatg-tttc 21114831  T
Q  192 ctctctatctttggatgaaacgtctctcttgcaatagtaatttgga 237  Q
    ||||||||||||||||||||  | ||||||||||| ||||||||||    
T  21114832 ctctctatctttggatgaaa--tgtctcttgcaattgtaatttgga 21114875  T

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Target: scaffold0755 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 5584 - 5443
Alignment:
Q  20 actaaattatccattcatactgaaatcgaaattaaaaataagaaatgtattatgaaagtatgtacccattgttgtcaaatggatgaaatgtatatttctc 119  Q
    ||||||| |||||||||||||||||| |||||||||||||||   ||||  |||||||||||||||  |||||  || ||||||||||||||| ||||||    
T  5584 actaaataatccattcatactgaaattgaaattaaaaataag---tgtaagatgaaagtatgtacctgttgttaccagatggatgaaatgtatctttctc 5488  T
Q  120 tttgttctaaaataaatggatgataaaagggataagaaatataga 164  Q
    | |||||| |||| ||||||||||||||| |||||||||||||||    
T  5487 tatgttctgaaatcaatggatgataaaagagataagaaatataga 5443  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 24863544 - 24863669
Alignment:
Q  88 ttgttgtcaaatggatgaaatgtatatttctctttgttctaaaataaatggatgataaaagggataagaaatatagaaacttggtgaaaccctgtcatgc 187  Q
    ||||||| ||||||||||||||||| |||||||||   ||||||| ||||||| ||||||| |||||||||||||||   ||||||||| |||||||||     
T  24863544 ttgttgttaaatggatgaaatgtatttttctcttt---ctaaaatcaatggatcataaaagagataagaaatatagatctttggtgaaa-cctgtcatg- 24863638  T
Q  188 tttcctctctatctttggatgaaacgtctct 218  Q
    |||||||||||||||||||| ||| ||||||    
T  24863639 tttcctctctatctttggattaaatgtctct 24863669  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 51862283 - 51862210
Alignment:
Q  10 aaaatcatcaactaaattatccattcatactgaaatcgaaattaaaaataagaaatgtattatgaaagtatgta 83  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  51862283 aaaatcaccaactaaatcatccattcatactgaaattgaaattaaaaataagaaatgtaagatgaaagtatgta 51862210  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 51862214 - 51862135
Alignment:
Q  107 atgtatatttctctttgttctaaaataaatggatgataaaagggataagaaatatagaaacttggtgaaaccctgtcatg 186  Q
    |||||| |||||||||||||| |||| ||||||||||||||| ||||| |||||| || | |||||||||||||||||||    
T  51862214 atgtatctttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaaccctgtcatg 51862135  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 39482310 - 39482375
Alignment:
Q  18 caactaaattatccattcatactgaaatcgaaattaaaaataagaaatgtattatgaaagtatgta 83  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||| ||||  |||||||||||||    
T  39482310 caactaaatcatccattcatactgaaattgaatttaaaaataagaagtgtaagatgaaagtatgta 39482375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 39482371 - 39482450
Alignment:
Q  107 atgtatatttctctttgttctaaaataaatggatgataaaagggataagaaatatagaaacttggtgaaaccctgtcatg 186  Q
    |||||| |||||||||||||| |||  ||||||||||||||| ||||| |||||| || | ||||| |||||||||||||    
T  39482371 atgtatctttctctttgttctgaaaccaatggatgataaaagagataataaatattgatatttggtaaaaccctgtcatg 39482450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 81675 - 81502
Alignment:
Q  22 taaattatccattcatactgaaatcgaaattaaaaataagaaatgtattatgaaagtatgtacccattgttgtcaaatggatgaaatgtatatttctctt 121  Q
    |||||||| |||||||||| |||| ||||| |||||||| || ||||  | |||||||| ||     ||||  ||| |||||| ||||||| ||| ||||    
T  81675 taaattattcattcatactaaaattgaaatcaaaaataaaaattgtaagacgaaagtatata-----tgttaccaattggatggaatgtatctttttctt 81581  T
Q  122 tgttctaaaataaatggatgataaaagggataagaaatatagaaacttggtgaaaccctgtcatgctttcctctctatcttt 203  Q
    | |||| |||| | ||||| ||||||| |||||||||||  ||   ||||||||||| || |||||| ||||||||||||||    
T  81580 tattctgaaatcagtggatcataaaagagataagaaata--gatctttggtgaaacc-tgacatgctatcctctctatcttt 81502  T

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