View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_60 (Length: 250)
Name: NF20242_low_60
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 969108 - 968876
Alignment:
| Q |
1 |
ccggtggtcatatttctctaataaacaattagcaataggcaacatgatttttaactaaatcagtctttaaaaatatatatctcctttttcacagtttaac |
100 |
Q |
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| T |
969108 |
ccggtggtcatatttctctaataaacaattagcaataggcaacatgatttttaactaaatcagtctttaaaaatatatatctcctttttcacagtttaac |
969009 |
T |
|
| Q |
101 |
tcacaataattaaacacatactactacaattttaggcttgaaaatgaaaacagtgagatttgtagaagacgacaacctaatctataaacaaaattagcgt |
200 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
969008 |
tcacaataatcaaacacatactactactattttaggcttgaaaatgaaaacagtgagatttgtagaagacgacaacctaatctataaactaaattagcgt |
968909 |
T |
|
| Q |
201 |
acctacagaaacttcctccagaaacgtgcatga |
233 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
968908 |
acctacagaaacttcctccagaaacgtacatga |
968876 |
T |
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