View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_63 (Length: 249)
Name: NF20242_low_63
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 27 - 233
Target Start/End: Original strand, 37162686 - 37162892
Alignment:
| Q |
27 |
atatagtatgtacatcaactttggcatatatgtaatgtaaacacttgctgtgaattaatttgcaaaagaaaatagaacaaattgtgcattgaagtacaat |
126 |
Q |
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| T |
37162686 |
atatagtatatacatcaactttggcatatatgtaatgtaaacacttgctgtgaattaatttgcaaaagaaaatagaacaaattgtgcattgaagtacaat |
37162785 |
T |
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| Q |
127 |
tctacaaccaaggcctcattttccttaactatatcaaccactttacattacttttgtttaaacagcaagtaacaatactggatttaataggttgatcatc |
226 |
Q |
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| T |
37162786 |
tctacaaccaaggcctcattttccttaactatatcaactactttacattacttttgtttaaacagcaagtaacaatactgaatttaataggttgatcatc |
37162885 |
T |
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| Q |
227 |
gaaactg |
233 |
Q |
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| T |
37162886 |
gaaactg |
37162892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37162629 - 37162663
Alignment:
| Q |
1 |
gtacgattataaaccatacacattccatatagtat |
35 |
Q |
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| T |
37162629 |
gtacgattataaaccatacacattccatatagtat |
37162663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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