View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_67 (Length: 244)
Name: NF20242_low_67
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_67 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 13660134 - 13660352
Alignment:
| Q |
9 |
gattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaaccagaatgtgatgcaaacttca |
108 |
Q |
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| T |
13660134 |
gattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaaccagaatgtgatgcaaacttca |
13660233 |
T |
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| Q |
109 |
ccttgctctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaatttgtatgatctttattggaggtcctgatgatcatg |
208 |
Q |
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| T |
13660234 |
ccttgctctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaatttgtatgatctttattggaggtcctgatgatcatg |
13660333 |
T |
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| Q |
209 |
aagccttagctgttgcatg |
227 |
Q |
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| T |
13660334 |
aagccttagctgttgcatg |
13660352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 13652634 - 13652852
Alignment:
| Q |
9 |
gattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaaccagaatgtgatgcaaacttca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
13652634 |
gattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaacctgaatgtgatgcaaactgca |
13652733 |
T |
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| Q |
109 |
ccttgctctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaatttgtatgatctttattggaggtcctgatgatcatg |
208 |
Q |
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| T |
13652734 |
ccttgctctgtgggaatctttgttgatcgtaatcttgggacattaccgaaaatgaactttcgaatttgtatgatatttgttggtggccctgatgaccatg |
13652833 |
T |
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| Q |
209 |
aagccttagctgttgcatg |
227 |
Q |
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| T |
13652834 |
aagccttaactgttgcatg |
13652852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 438134 - 437923
Alignment:
| Q |
16 |
cttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaaccagaatgtgatgcaaacttcaccttgct |
115 |
Q |
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| T |
438134 |
cttccattccacaaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaagatataaacttgaatgtgatgcaaagtgcaccttgct |
438035 |
T |
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| Q |
116 |
ctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaatttgtatgatctttattggaggtcctgatgatcatgaagcctt |
215 |
Q |
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| T |
438034 |
ctgtgggaatatttgtggaccgtgatcttgggtcattaccaactttaaattttcgtatttgtatgatctttgttggtggtcctgatgatcgcgaagcctt |
437935 |
T |
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| Q |
216 |
agctgttgcatg |
227 |
Q |
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| T |
437934 |
agctgttgcatg |
437923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 28608770 - 28608981
Alignment:
| Q |
16 |
cttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaaccagaatgtgatgcaaacttcaccttgct |
115 |
Q |
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||||||||||| ||||| ||||| | ||||||| | ||||||||| |||||| | ||||||||||||| |||||||||||||| | ||||||||| |
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| T |
28608770 |
cttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgttcaaagatataaacttgaatgtgatgcaaagtgcaccttgct |
28608869 |
T |
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| Q |
116 |
ctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaatttgtatgatctttattggaggtcctgatgatcatgaagcctt |
215 |
Q |
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| T |
28608870 |
ctgtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaattttcgtatttgtatgatctttgttggaggtcctgatgatcgcgaagcatt |
28608969 |
T |
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| Q |
216 |
agctgttgcatg |
227 |
Q |
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| T |
28608970 |
atctgtcgcatg |
28608981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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