View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20242_low_68 (Length: 242)

Name: NF20242_low_68
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20242_low_68
NF20242_low_68
[»] chr6 (2 HSPs)
chr6 (1-222)||(32197096-32197317)
chr6 (40-216)||(7824450-7824626)
[»] chr3 (3 HSPs)
chr3 (1-139)||(4740681-4740819)
chr3 (161-226)||(8075227-8075292)
chr3 (176-215)||(20017876-20017915)
[»] chr2 (3 HSPs)
chr2 (1-214)||(20947715-20947928)
chr2 (40-148)||(40639121-40639222)
chr2 (131-220)||(24739418-24739507)
[»] chr1 (3 HSPs)
chr1 (67-214)||(27364100-27364247)
chr1 (1-83)||(32159807-32159889)
chr1 (169-218)||(26260354-26260403)
[»] chr7 (3 HSPs)
chr7 (1-93)||(47543150-47543242)
chr7 (111-192)||(12092306-12092387)
chr7 (184-219)||(4609922-4609957)
[»] chr5 (1 HSPs)
chr5 (114-215)||(30722903-30723004)
[»] chr4 (1 HSPs)
chr4 (142-212)||(18921521-18921591)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32197096 - 32197317
Alignment:
Q  1 aaccacctataaatgaagtgcaaaacagaaccnnnnnnnttacaatgtaaaaataagtgttgagacgattccaacgatccacaaccagacacacacaacc 100  Q
    ||||||||||||||||||||| ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32197096 aaccacctataaatgaagtgccaaacagaaccaaaaaaattacaatgtaaaaataagtgttgagacgattccaacgatccacaaccagacacacacaacc 32197195  T
Q  101 tagatgcttgatcaataacgccacgacggagtaaattatcttttgtgggcaatcgatcttgaaacaagcgccacgcaaagagcacaaccttcaacggaac 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32197196 tggatgcttgatcaataacgccacgacggagtaaattatcttttgtgggcaatctatcttgaaacaagcgccacgcaaagagcacaaccttcaacggaac 32197295  T
Q  201 atctttatgccacaaggaagag 222  Q
    ||||||||||||||||||||||    
T  32197296 atctttatgccacaaggaagag 32197317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 216
Target Start/End: Original strand, 7824450 - 7824626
Alignment:
Q  40 ttacaatgtaaaaataagtgttgagacgattccaacgatccacaaccagacacacacaacctagatgcttgatcaataacgccacgacggagtaaattat 139  Q
    |||||||||||||| || || |  || |||||||| || ||||||||||  ||||| | ||| |||| ||  |||||||| ||||||||||  |||||||    
T  7824450 ttacaatgtaaaaacaaatgatttgaagattccaaagagccacaaccagcgacacatagcctggatgtttcgtcaataacaccacgacggaacaaattat 7824549  T
Q  140 cttttgtgggcaatcgatcttgaaacaagcgccacgcaaagagcacaaccttcaacggaacatctttatgccacaag 216  Q
    ||||||||||||||| |||| |||| || ||||||||||||| ||| |||||||||||||  ||| |||||||||||    
T  7824550 cttttgtgggcaatctatctcgaaaaaaccgccacgcaaagaacaccaccttcaacggaatgtctctatgccacaag 7824626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 4740819 - 4740681
Alignment:
Q  1 aaccacctataaatgaagtgcaaaacagaaccnnnnnnnttacaatgtaaaaataagtgttgagacgattccaacgatccacaaccagacacacacaacc 100  Q
    ||||||||||||||||||||| ||||||| ||       |||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||    
T  4740819 aaccacctataaatgaagtgccaaacagatccaaaaaaattacaatgtaaaaataagtgttgagatgattccaacgagccacaatcagacacacacaacc 4740720  T
Q  101 tagatgcttgatcaataacgccacgacggagtaaattat 139  Q
    | |||||||||||||||||||||||||| ||||| ||||    
T  4740719 tggatgcttgatcaataacgccacgacgaagtaagttat 4740681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 8075227 - 8075292
Alignment:
Q  161 gaaacaagcgccacgcaaagagcacaaccttcaacggaacatctttatgccacaaggaagagactg 226  Q
    ||||||||||||||||||| || ||||||||||| ||||||||||||||||| || ||||| ||||    
T  8075227 gaaacaagcgccacgcaaacagaacaaccttcaaaggaacatctttatgccaaaaagaagacactg 8075292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 20017876 - 20017915
Alignment:
Q  176 caaagagcacaaccttcaacggaacatctttatgccacaa 215  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  20017876 caaagagcacaaccttcaaaggaacatctttatgccacaa 20017915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 20947928 - 20947715
Alignment:
Q  1 aaccacctataaatgaagtgcaaaacagaaccnnnnnnnttacaatgtaaaaataagtgttgagacgattccaacgatccacaaccagacacacacaacc 100  Q
    ||||||||||||||||||  | | ||||||||       |||||||| | |||||| || |  || |||||||| || ||||||||||  ||||| | ||    
T  20947928 aaccacctataaatgaagaactagacagaaccaaaaaaattacaatgaagaaataaatgatttgaagattccaaagagccacaaccagcgacacaaagcc 20947829  T
Q  101 tagatgcttgatcaataacgccacgacggagtaaattatcttttgtgggcaatcgatcttgaaacaagcgccacgcaaagagcacaaccttcaacggaac 200  Q
     ||||| ||| || ||||||||||||||||  |||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||     
T  20947828 gagatgtttggtcgataacgccacgacggaacaaattatcttttgtgggcaatctatctcgaaacaatcgccacgcaaagagcacaaccttcaacggaat 20947729  T
Q  201 atctttatgccaca 214  Q
     ||||| |||||||    
T  20947728 gtctttgtgccaca 20947715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 40639121 - 40639222
Alignment:
Q  40 ttacaatgtaaaaataagtgttgagacgattccaacgatccacaaccagacacacacaacctagatgcttgatcaataacgccacgacggagtaaattat 139  Q
    ||||||||||||||||| || |  || |||||||| || |||||||||||||| ||||||||       ||||||||||| ||||||||||| |||||||    
T  40639121 ttacaatgtaaaaataaatgatttgatgattccaaggagccacaaccagacacgcacaacct-------tgatcaataacaccacgacggagcaaattat 40639213  T
Q  140 cttttgtgg 148  Q
    |||||||||    
T  40639214 cttttgtgg 40639222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 24739507 - 24739418
Alignment:
Q  131 gtaaattatcttttgtgggcaatcgatcttgaaacaagcgccacgcaaagagcacaaccttcaacggaacatctttatgccacaaggaag 220  Q
    ||||||| || || || ||||| |||||  |||| || ||||||||||| ||||| |||||||| || ||||| ||||||||||| ||||    
T  24739507 gtaaattgtccttcgttggcaaccgatcacgaaataaacgccacgcaaaaagcactaccttcaaggggacatccttatgccacaaagaag 24739418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 67 - 214
Target Start/End: Original strand, 27364100 - 27364247
Alignment:
Q  67 gattccaacgatccacaaccagacacacacaacctagatgcttgatcaataacgccacgacggagtaaattatcttttgtgggcaatcgatcttgaaaca 166  Q
    |||||||| || ||||||||||  ||||| | |||||||| |||||| ||||| |||||||| |  |||||| ||||||||||||||| |||| ||||||    
T  27364100 gattccaaagagccacaaccagcaacacaaagcctagatgtttgatcgataacaccacgacgaaacaaattaacttttgtgggcaatctatctcgaaaca 27364199  T
Q  167 agcgccacgcaaagagcacaaccttcaacggaacatctttatgccaca 214  Q
    | ||||||||||||| ||||||||||||||||| |||||| |||||||    
T  27364200 atcgccacgcaaagatcacaaccttcaacggaatatctttgtgccaca 27364247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 32159889 - 32159807
Alignment:
Q  1 aaccacctataaatgaagtgcaaaacagaaccnnnnnnnttacaatgtaaaaataagtgttgagacgattccaacgatccaca 83  Q
    ||||||||||||||||||||| ||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||    
T  32159889 aaccacctataaatgaagtgccaaacagatccaaaaaaattacaatgtaaaaataagtgttgagacgattccaacgatccaca 32159807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 26260403 - 26260354
Alignment:
Q  169 cgccacgcaaagagcacaaccttcaacggaacatctttatgccacaagga 218  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  26260403 cgccaagcaaagagcacaaccttcaaaggaacatccttatgccacaagga 26260354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 47543242 - 47543150
Alignment:
Q  1 aaccacctataaatgaagtgcaaaacagaaccnnnnnnnttacaatgtaaaaataagtgttgagacgattccaacgatccacaaccagacaca 93  Q
    ||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47543242 aaccacctataaatgaagtgccaaacagaaccaaaaaaattacaatgtaaaaataagtgttgagacgattccaacgatccacaaccagacaca 47543150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 12092387 - 12092306
Alignment:
Q  111 atcaataacgccacgacggagtaaattatcttttgtgggcaatcgatcttgaaacaagcgccacgcaaagagcacaaccttc 192  Q
    |||||||| ||||||||| | ||| ||||| ||||| ||||| | |||||||||||||||||| ||||| ||||| ||||||    
T  12092387 atcaataatgccacgacgaaataagttatcctttgtaggcaaccaatcttgaaacaagcgccaagcaaaaagcacgaccttc 12092306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 4609922 - 4609957
Alignment:
Q  184 acaaccttcaacggaacatctttatgccacaaggaa 219  Q
    |||||||||||| |||||||||||||||||||||||    
T  4609922 acaaccttcaacagaacatctttatgccacaaggaa 4609957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 30722903 - 30723004
Alignment:
Q  114 aataacgccacgacggagtaaattatcttttgtgggcaatcgatcttgaaacaagcgccacgcaaagagcacaaccttcaacggaacatctttatgccac 213  Q
    |||||| ||||||||||  |||||||||||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||  ||| ||||||||    
T  30722903 aataacaccacgacggaacaaattatcttttgtgggcaatctatctcgaaacaaccgccacgcaaagagcaccaccttcaacggaatgtctctatgccac 30723002  T
Q  214 aa 215  Q
    ||    
T  30723003 aa 30723004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 18921591 - 18921521
Alignment:
Q  142 tttgtgggcaatcgatcttgaaacaagcgccacgcaaagagcacaaccttcaacggaacatctttatgcca 212  Q
    ||||| || ||||||||  |||||||||||||| |||| ||||| |||||||| ||||| |||||||||||    
T  18921591 tttgtaggtaatcgatcacgaaacaagcgccacacaaaaagcaccaccttcaatggaacgtctttatgcca 18921521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University