View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20242_low_69 (Length: 238)

Name: NF20242_low_69
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20242_low_69
NF20242_low_69
[»] chr8 (1 HSPs)
chr8 (1-222)||(44926340-44926562)
[»] chr6 (1 HSPs)
chr6 (1-222)||(13738682-13738904)
[»] chr5 (1 HSPs)
chr5 (1-222)||(32454030-32454252)
[»] chr2 (2 HSPs)
chr2 (1-222)||(7473068-7473290)
chr2 (1-124)||(42516396-42516521)
[»] chr4 (1 HSPs)
chr4 (1-200)||(43781922-43782122)
[»] chr1 (1 HSPs)
chr1 (3-217)||(9447075-9447292)
[»] chr7 (2 HSPs)
chr7 (148-222)||(9455763-9455838)
chr7 (26-98)||(24771439-24771512)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44926340 - 44926562
Alignment:
Q  1 ttcttttccaaacacgggctgaactgaagctgcaatttcaagcttctgggtttttagaatcaattatgcataagccccaaattcttttccagttttacca 100  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||     
T  44926340 ttcttttccaaacgcgggttgaactgaagctgcaatttcaagcttctggctttttagaatcaattctgcataagccccaaattcttttccagttttaccc 44926439  T
Q  101 ctgtttt-ctgatgcgttttccctgcttggttcttgctacagtgctgtttctagaggtcacagaagaaagatgaatgggattctcattgcttcagaaaac 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  44926440 ctgtttttctgatgcgttttccctgcttggttcttgctacagtgccgtttctagaggtcagggaagaaagatgaatgggcttctcattgcttcagaaaac 44926539  T
Q  200 agaatccaaataaggcccttttt 222  Q
    | |||||||||||||||||||||    
T  44926540 aaaatccaaataaggcccttttt 44926562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13738682 - 13738904
Alignment:
Q  1 ttcttttccaaacacgggctgaactgaagctgcaatttcaagcttctgggtttttagaatcaattatgcataagccccaaattcttttccagttttacca 100  Q
    ||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||     
T  13738682 ttcttttccaaacgcaggttgaactgaagctgcaatttcaagcttctggctttttagaatcaattctgcataagccccaaattcttttccagttttaccc 13738781  T
Q  101 ctgtttt-ctgatgcgttttccctgcttggttcttgctacagtgctgtttctagaggtcacagaagaaagatgaatgggattctcattgcttcagaaaac 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  13738782 ctgtttttctgatgcgttttccctgcttggttcttgctacagtgccgtttctagaggtcatggaagaaagatgaatgggcttctcattgcttcagaaaac 13738881  T
Q  200 agaatccaaataaggcccttttt 222  Q
    |||||||||||||||||| ||||    
T  13738882 agaatccaaataaggcccctttt 13738904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32454030 - 32454252
Alignment:
Q  1 ttcttttccaaacacgggctgaactgaagctgcaatttcaagcttctgggtttttagaatcaattatgcataagccccaaattcttttccagttttacca 100  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||     
T  32454030 ttcttttccaaacgcgggttgaactgaagctgcaatttcaagcttctggctttttagaatcaattctgcataagccccaaattcttttccaattttaccc 32454129  T
Q  101 ctgtttt-ctgatgcgttttccctgcttggttcttgctacagtgctgtttctagaggtcacagaagaaagatgaatgggattctcattgcttcagaaaac 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||||    
T  32454130 ctgtttttctgatgcgttttccctgcttggttcttgctacagtgccgtttctagaggttagggaagaaagatgaatgggcttctcattgcttcagaaaac 32454229  T
Q  200 agaatccaaataaggcccttttt 222  Q
    |||||||||||||||||||||||    
T  32454230 agaatccaaataaggcccttttt 32454252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7473290 - 7473068
Alignment:
Q  1 ttcttttccaaacacgggctgaactgaagctgcaatttcaagcttctgggtttttagaatcaattatgcataagccccaaattcttttccagttttacca 100  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||     
T  7473290 ttcttttccaaacgcgggttgaattgaagctgcaatttcaagcttctgggtttttagaatcaattctgcataagctccaaattcttttccagttttaccc 7473191  T
Q  101 ctgtttt-ctgatgcgttttccctgcttggttcttgctacagtgctgtttctagaggtcacagaagaaagatgaatgggattctcattgcttcagaaaac 199  Q
    ||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  7473190 ctgtttttctaatgcgttttccctgcttggttcttgctacagtaccgtttctagaggtcagggaagaaagatgaatgggcttctcattgcttcagaaaac 7473091  T
Q  200 agaatccaaataaggcccttttt 222  Q
    |||||||||||||||||||||||    
T  7473090 agaatccaaataaggcccttttt 7473068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 42516521 - 42516396
Alignment:
Q  1 ttcttttccaaacacgggctgaactgaagctgcaatttcaagcttctgggtttttagaatcaattatgcataagccccaaattcttttccagttttacca 100  Q
    ||||||||||||  |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||     
T  42516521 ttcttttccaaatgcgggttgaactgaagctgcaattccaagcttctgcgtttttagaatcaattatgcagaagccccaaatttatttccagttttaccc 42516422  T
Q  101 ctg--ttttctgatgcgttttccctg 124  Q
    |||  |||||||||||||||||||||    
T  42516421 ctgttttttctgatgcgttttccctg 42516396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 43782122 - 43781922
Alignment:
Q  1 ttcttttccaaacacgggctgaactgaagctgcaatttcaagcttctgggtttttagaatcaattatgcataagccccaaattcttttccagttttacca 100  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||     
T  43782122 ttcttttccaaacgcgggttgaactgaagctgcaatttcaagcttctggctttttagaatcaattctgcataagccccaaattcttttccagttttaccc 43782023  T
Q  101 ctg-ttttctgatgcgttttccctgcttggttcttgctacagtgctgtttctagaggtcacagaagaaagatgaatgggattctcattgcttcagaaaac 199  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  43782022 ctgtttttctgatgcgttttccctgcttggttcttgctacagtgccgtttctagaggtcagggaagaaagatgaatgggcttctcattgcttcagaaaac 43781923  T
Q  200 a 200  Q
    |    
T  43781922 a 43781922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 9447075 - 9447292
Alignment:
Q  3 cttttccaaacacgggctgaactgaagctgcaatttcaagcttctgggtttttagaatcaattatgcataagccccaaattcttttccagttttaccact 102  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||| ||| | ||||||||||||| |||||||||||||| |     
T  9447075 cttttccaaacgcgggttgaactgaagctgcaattccaagcttctgcgtttttagaatcaatcatgaagaagccccaaattcatttccagttttacctcg 9447174  T
Q  103 gtttt-ctgatgcgttttccctgcttggttcttgctacagtgctgtttctagaggtcacagaagaaagatgaatgggattctcattgcttcagaaaac-- 199  Q
    ||||| |||||| |||||||||||||||||||||||||||||  ||||||||||||||  |||| ||||| |||||||||||||||||||||||||||      
T  9447175 gtttttctgatgtgttttccctgcttggttcttgctacagtggcgtttctagaggtcagggaaggaagatcaatgggattctcattgcttcagaaaacaa 9447274  T
Q  200 agaatccaaataaggccc 217  Q
    ||||||||||||| ||||    
T  9447275 agaatccaaataaagccc 9447292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 9455763 - 9455838
Alignment:
Q  148 ttctagaggtcacagaagaaagatgaatgggattctcattgcttcagaaaac--agaatccaaataaggcccttttt 222  Q
    ||||||||||||  ||||||||||||||||| |||||||||||| |||||||  |||||||||||||||||| ||||    
T  9455763 ttctagaggtcagggaagaaagatgaatgggcttctcattgctt-agaaaacaaagaatccaaataaggcccatttt 9455838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 24771512 - 24771439
Alignment:
Q  26 gaagctgcaatttcaagcttctgggt-ttttagaatcaattatgcataagccccaaattcttttccagttttac 98  Q
    |||||| |||||||||||||||| || | ||| |||||||| ||||||| |||||||||  ||||||| |||||    
T  24771512 gaagctacaatttcaagcttctgcgtctattaaaatcaattctgcataaaccccaaattaatttccagctttac 24771439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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