View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_72 (Length: 235)
Name: NF20242_low_72
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10654487 - 10654707
Alignment:
| Q |
1 |
taactctttgatgcatgggattacatgtaactccatgccaattacagtagtgatttgaagtattccaagaggccaagattccatatgggtcattagaaat |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10654487 |
taactctttgatgcatgggattacatgtaattccatgccaattacagtagtgatttgaagtattccaagaggccaagattccatatgggtcattagaaat |
10654586 |
T |
|
| Q |
101 |
tgattctttgaatttgagtaacgctaagtaatcagtcttgtttcctaaggtagaggtaattgtgttttggacaaagttgagagtaaagagaagagataac |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10654587 |
tgattctttgaatttgagtaacgctaagtaatctgtcttgtttcctaaggtagaggtaattgtgttttggacaaagttgagagtaaagagaagagataac |
10654686 |
T |
|
| Q |
201 |
caaaatgaaaatgttggaaac |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
10654687 |
caaaatgaaaatgttggaaac |
10654707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10662370 - 10662590
Alignment:
| Q |
1 |
taactctttgatgcatgggattacatgtaactccatgccaattacagtagtgatttgaagtattccaagaggccaagattccatatgggtcattagaaat |
100 |
Q |
| |
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|||||||||| |||||| || |||| | || || ||||| || ||||||||| ||||||||||||||||| |||||| |||| ||||||||||| || |
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| T |
10662370 |
taactctttgttgcatgagactacacgcaatcccgtgccagttgcagtagtgagttgaagtattccaagagctcaagatctcatacgggtcattagatat |
10662469 |
T |
|
| Q |
101 |
tgattctttgaatttgagtaacgctaagtaatcagtcttgtttcctaaggtagaggtaattgtgttttggacaaagttgagagtaaagagaagagataac |
200 |
Q |
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|||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
10662470 |
tgattctttgaatttgagcaacgctaagtaatccgtctcgtttcttaaggtagaggtaattgtgttttggacaaagttgagagcaaagagaagatataac |
10662569 |
T |
|
| Q |
201 |
caaaatgaaaatgttggaaac |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
10662570 |
caaaatgaaaatgttggaaac |
10662590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 7190925 - 7190706
Alignment:
| Q |
2 |
aactctttgatgcatgggattacatgtaactccatgccaattacagtagtgatttgaagtattccaagaggccaagattccatatgggtcattagaaatt |
101 |
Q |
| |
|
||||||||||||||||||| | ||||| | ||||| ||| || ||| ||||| ||||| |||||||||||||||||||||||||||| |||||||| ||| |
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| T |
7190925 |
aactctttgatgcatgggactgcatgtgattccataccacttgcagaagtgagttgaactattccaagaggccaagattccatatggatcattagatatt |
7190826 |
T |
|
| Q |
102 |
gattctttgaatttgagtaacgctaagtaatcagtcttgtttcctaaggtagaggtaattgtgttttggacaaagttgagagtaaagagaagagataacc |
201 |
Q |
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||||||||||| ||||| ||||| |||| ||| |||| ||||||| ||||| |||| ||||||||||| ||||||| || || ||||| |||||||| |
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| T |
7190825 |
gattctttgaacttgagcaacgccaagttatcggtctcagttcctaatgtagaagtaaatgtgttttggaagaagttgaaagcaatgagaaaagataacc |
7190726 |
T |
|
| Q |
202 |
aaaatgaaaatgttggaaac |
221 |
Q |
| |
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||| |||||||||||||||| |
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| T |
7190725 |
aaagtgaaaatgttggaaac |
7190706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 19608150 - 19608296
Alignment:
| Q |
1 |
taactctttgatgcatgggattacatgtaactccatgccaattacagtagtgatttgaagtattccaagaggccaagattccatatgggtcattagaaat |
100 |
Q |
| |
|
||||||||||||||||||| | ||||| | |||||||||||| || |||| ||||| |||||||||| | |||| ||||| ||||||| | || || |
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| T |
19608150 |
taactctttgatgcatggggctgcatgtgattccatgccaattgcaaaagtgtgttgaactattccaagaatctaagactccatttgggtcaattgatat |
19608249 |
T |
|
| Q |
101 |
tgattctttgaatttgagtaacgctaagtaatcagtcttgtttccta |
147 |
Q |
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||| |||||||||| ||| || | ||| |||||||||| ||||||| |
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| T |
19608250 |
tgaatctttgaattggagcaatgttaaataatcagtctgatttccta |
19608296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 9838613 - 9838726
Alignment:
| Q |
1 |
taactctttgatgcatgggattacatgtaactccatgccaattacagtagtgatttgaagtattccaagaggccaagattccatatgggtcattagaaat |
100 |
Q |
| |
|
||||||||||||||||||| || ||||| | ||||||||| || ||| |||| | |||| ||||||||| | |||| ||||| ||||||| | || || |
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| T |
9838613 |
taactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatat |
9838712 |
T |
|
| Q |
101 |
tgattctttgaatt |
114 |
Q |
| |
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|||||||||||||| |
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| T |
9838713 |
tgattctttgaatt |
9838726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 10599013 - 10598917
Alignment:
| Q |
1 |
taactctttgatgcatgggattacatgtaactccatgccaattacagtagtgatttgaagtattccaagaggccaagattccatatgggtcattaga |
97 |
Q |
| |
|
|||||||||||||| ||||||| ||| | | |||||||||||| || ||||| ||||| |||||||||| | ||||| |||||||||||| |||| |
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| T |
10599013 |
taactctttgatgcttgggattgcatatgattccatgccaattgcaaaagtgagttgaactattccaagaatctaagataccatatgggtcactaga |
10598917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 12955641 - 12955578
Alignment:
| Q |
84 |
tatgggtcattagaaattgattctttgaatttgagtaacgctaagtaatcagtcttgtttccta |
147 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| || || || | |||||| | |||||||| |
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| T |
12955641 |
tatgggtcactagaaattgattctttgaatttgagcaatgccaaatgatcagtttggtttccta |
12955578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 17925774 - 17925837
Alignment:
| Q |
84 |
tatgggtcattagaaattgattctttgaatttgagtaacgctaagtaatcagtcttgtttccta |
147 |
Q |
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||||||||| ||||||||||||||||||||||||| || || || | |||||| | |||||||| |
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| T |
17925774 |
tatgggtcactagaaattgattctttgaatttgagcaatgccaaatgatcagtttggtttccta |
17925837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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