View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_73 (Length: 233)
Name: NF20242_low_73
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_73 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 37765147 - 37765367
Alignment:
| Q |
1 |
atgaaaacatggtcaagcattttttatggctctcagtttcaggaatataatataatggtgtgaaagaagtaaagaaaaaattaatggcataaacaacgga |
100 |
Q |
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| T |
37765147 |
atgaaaacatggtcaagcattttttatggctctcagtttcag---tataatataatggtgtgaaagaagtaaagaaaaaattaatggcataaacaaccga |
37765243 |
T |
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| Q |
101 |
cctcacaagtaattctatgcgagtcaaggaaagctttattaaaatatcgaatcgcttcctgagctaccttggctgtacgaaatcctataaaagcaaacag |
200 |
Q |
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| T |
37765244 |
cctcacaagtaattctatgcgagtcaaggaaagatttattaaaatatcaaatcgctt---------ccttggctgtacgaaacccaataaaagcaaacag |
37765334 |
T |
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| Q |
201 |
tcgagttttgccatttctgaattaacagtaaac |
233 |
Q |
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| T |
37765335 |
tcgagttttgccatttctgaattaacagtaaac |
37765367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 37560617 - 37560386
Alignment:
| Q |
2 |
tgaaaacatggtcaagcattttttatggctctcagtttcaggaatataatataatggtgtgaaagaagtaaagaaaaaattaatggcataaacaacggac |
101 |
Q |
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| T |
37560617 |
tgaaaacatggtcaaacattttttatggctctcagtttcagtaatataa-ataatagtgtgaaagaagttaagaaaaaattaatggtataaacaaccgac |
37560519 |
T |
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| Q |
102 |
ctcacaagtaattctatgcgagtcaaggaaagctttattaaaatatcgaatcgcttcctgagctaccttggctgtacgaaatcctataaaagcaaacagt |
201 |
Q |
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| T |
37560518 |
ctcacaagtaattctaagcgtgtaaaggtaacaactattcaaatatcgaatcgcttcctgagcttcctcggctgtacgaaatccgataaaagaaaatagt |
37560419 |
T |
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| Q |
202 |
cgagttttgccatttctgaatt-aacagtaaac |
233 |
Q |
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| T |
37560418 |
caacttttgccatatctgagttaaacagtaaac |
37560386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 37743955 - 37744183
Alignment:
| Q |
4 |
aaaacatggtcaagcattttttatggctctcagtttcaggaatat-------aatataatggtgtgaaagaagtaaagaaaaaattaatggcataaacaa |
96 |
Q |
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| T |
37743955 |
aaaacatggtcgagcatttttaatggctctcagtttcagtaatatgataaataatataatagtgtgaaagaagttaagaaaaaat-aatggcataaacaa |
37744053 |
T |
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| Q |
97 |
cggacctcacaagtaattctatgcgagtcaaggaaagctttattaaaatatcgaatcgcttcctgagctaccttggctgtacgaaatcctataaaagcaa |
196 |
Q |
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| T |
37744054 |
ccgacctcacaagtaattgcttgcgtgtcaaggtaagatttattaaaatatttaatcgctgcctgagcttcctggtctgtacgaaatccgataaaagcaa |
37744153 |
T |
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| Q |
197 |
acagtcgagttttgccatttctgaattaac |
226 |
Q |
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| T |
37744154 |
attggcgacttttcccgtttctgagttaac |
37744183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 38601013 - 38600883
Alignment:
| Q |
66 |
gaagtaaagaaaaaattaatggcataaacaacggacctcacaagtaattctatgcgagtcaaggaaagctttattaaaatatcgaatcgcttcctgagct |
165 |
Q |
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||||| ||||||||| ||||| | ||||||| |||||||||||||||| | || | ||||| | ||| ||||||| || |||||| |||||||||||| |
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| T |
38601013 |
gaagttaagaaaaaac-aatggtacaaacaactgacctcacaagtaattttttgtgtgtcaaagtaagaattattaagatgtcgaattgcttcctgagct |
38600915 |
T |
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| Q |
166 |
accttggctgtacgaaatcctataaaagcaaa |
197 |
Q |
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| T |
38600914 |
tcccggtcggtacgaaatccaataaaagcaaa |
38600883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38601169 - 38601129
Alignment:
| Q |
1 |
atgaaaacatggtcaagcattttttatggctctcagtttca |
41 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||| |
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| T |
38601169 |
atgaaaacttggtcaagcattttttatggctctcggtttca |
38601129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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