View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20242_low_74 (Length: 232)

Name: NF20242_low_74
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20242_low_74
NF20242_low_74
[»] chr5 (2 HSPs)
chr5 (20-217)||(2469421-2469619)
chr5 (154-217)||(17477313-17477376)
[»] chr8 (3 HSPs)
chr8 (154-217)||(8919464-8919527)
chr8 (154-217)||(40915137-40915200)
chr8 (154-217)||(42163276-42163339)
[»] chr7 (3 HSPs)
chr7 (154-217)||(40093776-40093839)
chr7 (175-217)||(49055262-49055304)
chr7 (178-214)||(7385867-7385903)
[»] chr1 (8 HSPs)
chr1 (154-217)||(5182946-5183009)
chr1 (154-217)||(17291174-17291237)
chr1 (154-217)||(52020484-52020547)
chr1 (157-217)||(17282745-17282805)
chr1 (157-217)||(24168925-24168985)
chr1 (157-217)||(45063622-45063682)
chr1 (154-217)||(17291946-17292009)
chr1 (175-217)||(17291458-17291500)
[»] chr2 (1 HSPs)
chr2 (156-217)||(32592978-32593039)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 2469421 - 2469619
Alignment:
Q  20 tttggcagggcaatgactgtcatatctgtcgctctaggtcgaacttttcattatgttgacgaactcttgccgttcaggtttttccttattctctgnnnnn 119  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||         
T  2469421 tttggcagggcaatgactgtcatttctgtcgctctaggtcgaacttttcattatgtcgacgaactcttgccgttcaggtttttccttat--tctgttttt 2469518  T
Q  120 nnnnnnnattggcnnnnnnnttgtaaaact---gatgaaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactg 216  Q
           ||||||        |||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2469519 attttttattggcaaaaaaaatgtaaaacttaacatgaaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactg 2469618  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 17477313 - 17477376
Alignment:
Q  154 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17477313 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 17477376  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 8919527 - 8919464
Alignment:
Q  154 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8919527 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 8919464  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 40915137 - 40915200
Alignment:
Q  154 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40915137 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 40915200  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 42163276 - 42163339
Alignment:
Q  154 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42163276 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 42163339  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 40093776 - 40093839
Alignment:
Q  154 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40093776 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 40093839  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 49055304 - 49055262
Alignment:
Q  175 aaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  49055304 aaccggtgacctcttgatctgcagtcaaatgctctaccactga 49055262  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 7385903 - 7385867
Alignment:
Q  178 cggtgacctcttgatctgcagtcaaatgctctaccac 214  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7385903 cggtgacctcttgatcttcagtcaaatgctctaccac 7385867  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 5182946 - 5183009
Alignment:
Q  154 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5182946 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 5183009  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 17291237 - 17291174
Alignment:
Q  154 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17291237 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 17291174  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 52020484 - 52020547
Alignment:
Q  154 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52020484 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 52020547  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 17282805 - 17282745
Alignment:
Q  157 agggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17282805 agggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 17282745  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 24168925 - 24168985
Alignment:
Q  157 agggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24168925 agggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 24168985  T

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Target: chr1; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 45063622 - 45063682
Alignment:
Q  157 agggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45063622 agggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 45063682  T

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Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 17291946 - 17292009
Alignment:
Q  154 aaaagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  17291946 aaaagggcccaaccggtatcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 17292009  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 17291500 - 17291458
Alignment:
Q  175 aaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  17291500 aaccggtgacctcttgatctgcagtcaaatgctctaccactga 17291458  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 32593039 - 32592978
Alignment:
Q  156 aagggcccaaccgggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 217  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32593039 aagggcccaaccaggttcgaaccggtgacctcttgatctgcagtcaaatgctctaccactga 32592978  T

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