View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_75 (Length: 230)
Name: NF20242_low_75
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_75 |
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| [»] chr6 (7 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 3576403 - 3576177
Alignment:
| Q |
4 |
aggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaacat |
103 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3576403 |
aggcccaagcgttgttgttgacggggtcagtgatatggtcggcaaggttctctagaggtccctttccggttacaatggcctgaacgaagaatccaaacat |
3576304 |
T |
|
| Q |
104 |
agagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcggcgaggcccaatgggtcaaagcttccacct |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3576303 |
agagaacatagctagcctaccattcttaagttctttcacctttaactctgcaaaagcctctgggtcgtcagcgaggcccaatgggtcaaagcttccacct |
3576204 |
T |
|
| Q |
204 |
gggtagagtgggtcgactacctcacca |
230 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
3576203 |
gggtagagtgggtcgactacctcacca |
3576177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 3578259 - 3578033
Alignment:
| Q |
4 |
aggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaacat |
103 |
Q |
| |
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|||||||||||||| ||||||| || |||||||| ||||| |||||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||| |
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| T |
3578259 |
aggcccaagcgttgctgttgactggatcagcgatgtggtcagcaaggttctctagtggtcccttttcggttacaatggcctgaacgaaaaatccaaacat |
3578160 |
T |
|
| Q |
104 |
agagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcggcgaggcccaatgggtcaaagcttccacct |
203 |
Q |
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||||||||||||| ||| |||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3578159 |
cgagaacatagctaacctgccattcttgagttctttaacctttaactctgcaaaagcctctgggtcgtctgcgaggcccaatgggtcaaagcttccaccg |
3578060 |
T |
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| Q |
204 |
gggtagagtgggtcgactacctcacca |
230 |
Q |
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||||||||||| ||||||||||||||| |
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| T |
3578059 |
gggtagagtggatcgactacctcacca |
3578033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 3584815 - 3585041
Alignment:
| Q |
4 |
aggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaacat |
103 |
Q |
| |
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||||||||||||||||||| || ||||||||||| ||||| |||||||| | || |||||||||||| || || ||||| ||||| |||||||||||||| |
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| T |
3584815 |
aggcccaagcgttgttgttaactgggtcagcgatgtggtcagcaaggttttttaaaggtccctttccggtcacgatggcttgaacaaagaatccaaacat |
3584914 |
T |
|
| Q |
104 |
agagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcggcgaggcccaatgggtcaaagcttccacct |
203 |
Q |
| |
|
||||||||| |||| |||||||||||| |||||||| ||||||| ||||||||||||||| ||||| || || ||||||||||||||||||||||||||| |
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| T |
3584915 |
agagaacatcgctaacctaccattcttgagttctttaacctttaactctgcaaaagcctcggggtcctcagcaaggcccaatgggtcaaagcttccacct |
3585014 |
T |
|
| Q |
204 |
gggtagagtgggtcgactacctcacca |
230 |
Q |
| |
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|| |||||||||||||||||||||||| |
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| T |
3585015 |
ggatagagtgggtcgactacctcacca |
3585041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 3564425 - 3564199
Alignment:
| Q |
3 |
taggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaaca |
102 |
Q |
| |
|
||||||||||| |||||||| || |||||||| | |||||||| |||||||| | ||||||||||||||| |||||||| |||||||| |||||||||| |
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| T |
3564425 |
taggcccaagcattgttgttaaccgggtcagcaaggtggtcggcgaggttctcgataggtccctttccagtcacaatggcttgaacgaaaaatccaaaca |
3564326 |
T |
|
| Q |
103 |
tagagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcggcgaggcccaatgggtcaaagcttccacc |
202 |
Q |
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||||||||||||||| ||||||||| || |||||||||||||| | ||||||||||||||| || || ||||| |||||||| ||||||||||| ||||| |
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| T |
3564325 |
tagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaaggcccaaggggtcaaagctgccacc |
3564226 |
T |
|
| Q |
203 |
tgggtagagtgggtcgactacctcacc |
229 |
Q |
| |
|
||||||||||||||| || |||||||| |
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| T |
3564225 |
tgggtagagtgggtcaaccacctcacc |
3564199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3570075 - 3569850
Alignment:
| Q |
1 |
cataggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaa |
100 |
Q |
| |
|
||||||||||||| |||||||| || || ||||| | ||||| || |||||||| | |||||||||||| || |||||||||||||||||||||||||| |
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| T |
3570075 |
cataggcccaagcattgttgttaactggatcagcaaggtggtcagcgaggttctcaataggtccctttccggtgacaatggcctgaacgaagaatccaaa |
3569976 |
T |
|
| Q |
101 |
catagagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcggcgaggcccaatgggtcaaagcttcca |
200 |
Q |
| |
|
||||||||||||||||| ||||||||| || |||||||||||||| | ||||||||||||||| || || ||||| |||||||| ||||||||||| ||| |
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| T |
3569975 |
catagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaaggcccaaggggtcaaagctgcca |
3569876 |
T |
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| Q |
201 |
cctgggtagagtgggtcgactacctc |
226 |
Q |
| |
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|||||||||||||| ||||||||||| |
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| T |
3569875 |
cctgggtagagtggatcgactacctc |
3569850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 13276350 - 13276124
Alignment:
| Q |
4 |
aggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaacat |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| ||||| |||||||| || | |||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
13276350 |
aggcccaagcgttgttgttgaccgggtctgcgaggtggtcagcaaggttttccaaaggtccctttccggtcacaatggcttgaacgaagaatccaaacat |
13276251 |
T |
|
| Q |
104 |
agagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcggcgaggcccaatgggtcaaagcttccacct |
203 |
Q |
| |
|
||| ||||| |||| |||||||||||||| |||||||| || | |||| ||||||| |||||||| |||||||| ||||||||||| ||||| |||||| |
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| T |
13276250 |
agaaaacatggctaacctaccattcttaatctctttcactttcaactctacaaaagcttctgggtcatcggcgagacccaatgggtcgaagctaccacct |
13276151 |
T |
|
| Q |
204 |
gggtagagtgggtcgactacctcacca |
230 |
Q |
| |
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|||||||||||||| | ||||||||| |
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| T |
13276150 |
gggtagagtgggtcaatcacctcacca |
13276124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 3573122 - 3572894
Alignment:
| Q |
1 |
cataggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaa |
100 |
Q |
| |
|
|||||||||| || |||||||| || |||||||| | ||||| ||||| ||||||| |||||| ||||| |||||||| || ||||| ||||||||||| |
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| T |
3573122 |
cataggcccatgcattgttgttaactgggtcagcaaggtggtcagcaagattctctataggtccttttccggttacaatagcttgaacaaagaatccaaa |
3573023 |
T |
|
| Q |
101 |
catagagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcggcgaggcccaatgggtcaaagcttcca |
200 |
Q |
| |
|
||| || |||||||||| ||| ||||| || |||||||||||||||| ||||||||||||||||||||| || || ||||| ||||||||||| || ||| |
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| T |
3573022 |
catggaaaacatagctaaccttccatttttgagttctttcacctttaactctgcaaaagcctctgggtcatcagctaggcctaatgggtcaaaactacca |
3572923 |
T |
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| Q |
201 |
cctgggtagagtgggtcgactacctcacc |
229 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
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| T |
3572922 |
cctgggtagagtgggtcgacaacctcacc |
3572894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 38357442 - 38357213
Alignment:
| Q |
1 |
cataggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| || | ||| |||||||||||||| | |||||||||||| || ||||| |||||||| |||||||| || |
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| T |
38357442 |
cataggcccatgcgttgttgttgactgggtcggcaagatgatcggcaaggttctccaaaggtccctttccggtcacaatagcctgaacaaagaatccgaa |
38357343 |
T |
|
| Q |
101 |
catagagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcggcgaggcccaatgggtcaaagcttcca |
200 |
Q |
| |
|
|||||||||||| |||| ||||| ||||| ||||| || ||||| | |||||| ||||||||||||||||| || |||||||||||||||||||| || |
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| T |
38357342 |
catagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcctctgggtcgtcagctaggcccaatgggtcaaagctgcct |
38357243 |
T |
|
| Q |
201 |
cctgggtagagtgggtcgactacctcacca |
230 |
Q |
| |
|
|||||||| |||||||| || ||||||||| |
|
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| T |
38357242 |
cctgggtatagtgggtcaacaacctcacca |
38357213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 42603234 - 42603125
Alignment:
| Q |
6 |
gcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaacatag |
105 |
Q |
| |
|
||||| ||||||||| || |||||||| | ||||||| |||||||| | || ||||| ||||| |||||||| ||||| ||||| |||||||| | |
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| T |
42603234 |
gcccatgcgttgttggcaacagggtcagcaacatggtcgtaaaggttctgaacggggcccttgccagtaacaatggcttgaacaaagaaaccaaacatgg |
42603135 |
T |
|
| Q |
106 |
agaacatagc |
115 |
Q |
| |
|
|||||||||| |
|
|
| T |
42603134 |
agaacatagc |
42603125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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