View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20242_low_8 (Length: 606)
Name: NF20242_low_8
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 557
Target Start/End: Complemental strand, 14543257 - 14542733
Alignment:
| Q |
15 |
aaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagacgaatcagc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
14543257 |
aaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaaagattagcatgttttttctgccaatagatgaatcagc |
14543158 |
T |
|
| Q |
115 |
taatgctgcaaggaaaaaagaaccaagaagacaacctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatga |
214 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14543157 |
taatgctgcaagaaaaaaagaaccaagaagacaacctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatga |
14543058 |
T |
|
| Q |
215 |
gaaatgattgtgtttgaaggatgtgtgtcccaagaccaagaagatcttgggagtttgcatatatcagaagatgaagtgcatgttgaatttgtgtttgtgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
14543057 |
gaaatgattgtgtttgaaggatgtgtgtcccaagaccaagaagatcttgggagtttgcatatatcagaggatgaagtgcatattgaatt----------- |
14542969 |
T |
|
| Q |
315 |
ttgtgtttgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacatggctactgctacaagaacagcttg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
14542968 |
-------tgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgcaactgcaacaagaacagcttg |
14542876 |
T |
|
| Q |
415 |
taagaaatccatccacccaaaatttgataaacttttttctataattacatcccatgataaaattggtttcttttcttgctcaatattggaatgagattca |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14542875 |
taagaaatccatccacccaaaatttgataaacttttttctataattacatcccatgacaaaattggtttcttttcttgctcaatattggaatgagattca |
14542776 |
T |
|
| Q |
515 |
ggtacattaatttgtactgaaccttccatagctattgaaaatg |
557 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14542775 |
ggtacattaatttgtactgaaccttccattgctattgaaaatg |
14542733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 15 - 551
Target Start/End: Original strand, 14580330 - 14580848
Alignment:
| Q |
15 |
aaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagacgaatcagc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14580330 |
aaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagatgaatcagc |
14580429 |
T |
|
| Q |
115 |
taatgctgcaaggaaaaaagaaccaagaagacaacctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatga |
214 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14580430 |
taatgctgcaagaaaaaaagaaccaagaagacaacctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatga |
14580529 |
T |
|
| Q |
215 |
gaaatgattgtgtttgaaggatgtgtgtcccaagaccaagaagatcttgggagtttgcatatatcagaagatgaagtgcatgttgaatttgtgtttgtgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
14580530 |
gaaatgattgtgtttgaaggatgtgtgtcccaagaccaagaagatcttgggagtttgcatatatcagaggatgaagtgcatattgaa------------- |
14580616 |
T |
|
| Q |
315 |
ttgtgtttgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacatggctactgctacaagaacagcttg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
14580617 |
-----tttgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgcaactgcaacaagaacagcttg |
14580711 |
T |
|
| Q |
415 |
taagaaatccatccacccaaaatttgataaacttttttctataattacatcccatgataaaattggtttcttttcttgctcaatattggaatgagattca |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14580712 |
taagaaatccatccacccaaaatttgataaacttttttctataattacatcccatgacaaaattggtttcttttcttgctcaatattggaatgagattca |
14580811 |
T |
|
| Q |
515 |
ggtacattaatttgtactgaaccttccatagctattg |
551 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14580812 |
agtacattaatttgtactgaaccttccattgctattg |
14580848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 471
Target Start/End: Original strand, 34263541 - 34263991
Alignment:
| Q |
15 |
aaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagacgaatcagc |
114 |
Q |
| |
|
||||||||||||| || ||||||||||| || ||||||||||||||||| ||||||||||||| || ||||||||||| ||||| ||| |||||||| |
|
|
| T |
34263541 |
aaatccaaacattagtggaaaagattatcagaatggaagttattgacatcagaacacaagaaaagaataacatgttttttcgaccaaaagatgaatcagc |
34263640 |
T |
|
| Q |
115 |
taatgctgcaaggaaaaaagaaccaagaagacaacctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatga |
214 |
Q |
| |
|
|||||||||||| || || | |||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34263641 |
taatgctgcaagaaaggaaaagccaaaaaaacaacctatgaagaaagaagattgtggtaaacctgtgatgaatgtgctagcacattcaagattccaatga |
34263740 |
T |
|
| Q |
215 |
gaaatgattgtgtttgaaggatgtgtgtcccaagaccaagaagatcttgggagtttgcatatatcagaagatgaagtgcatgttgaatttgtgtttgtgt |
314 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| || ||||| |||| |||| ||||||| |
|
|
| T |
34263741 |
gaaatgattgtgtttgaagggtgtgtgtcccaagaccaagaagatcttgagagtttgcaaatatcagaggacgaagtacatgatgaa------tttgtgt |
34263834 |
T |
|
| Q |
315 |
ttgtgtttgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacatggctactgctacaagaacagcttg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||||||| |
|
|
| T |
34263835 |
ttgtgtttgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaatgactgttgtgcatcaaagaacatagcaaatgctacaagaacagcttg |
34263934 |
T |
|
| Q |
415 |
taagaaatccatccacccaaaatttgataaacttttttctataattacatcccatga |
471 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
34263935 |
aaagaaatccatccaaccaaaatttgataaacttttttctattatttcatcccatga |
34263991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 372
Target Start/End: Original strand, 35622459 - 35622810
Alignment:
| Q |
15 |
aaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagacgaatcagc |
114 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||| | ||| | |||||| ||||| |
|
|
| T |
35622459 |
aaatccaaacattggtggataagattataagcatggaagttattgacattgagacacaagaaaatattaggacttttttccgaccgaaagacgagtcagc |
35622558 |
T |
|
| Q |
115 |
taatgctgcaaggaaaaaagaaccaagaagacaacctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatga |
214 |
Q |
| |
|
|||||||||||| || |||||||||||||||| ||| | ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |
|
|
| T |
35622559 |
taatgctgcaagaaaggaagaaccaagaagacagcctgtgaagaaagaagattgtggtaaacctatgacgaatgtgctagcacattcaagattccaataa |
35622658 |
T |
|
| Q |
215 |
gaaatgattgtgtttgaaggatgtgtgtcccaagaccaagaagatcttgggagtttgcatatatcagaagatgaagtgcatgttgaatttgtgtttgtgt |
314 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |||| |||| ||||||| |
|
|
| T |
35622659 |
gaaatgattgtgtttgaagagtgtgtgtcccaagaccaagaggatcttgggagtttgcaaatatcagaggatgaagaacatgatgaa------tttgtgt |
35622752 |
T |
|
| Q |
315 |
ttgtgtttgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaatgattg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35622753 |
ttgtgtttgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaatgattg |
35622810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 364 - 550
Target Start/End: Original strand, 35622991 - 35623177
Alignment:
| Q |
364 |
gaatgattgttgtgcatcaaagaacatggctactgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctataattaca |
463 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35622991 |
gaatgattgttgtgcatcaaagaacattgctattgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctatgattaca |
35623090 |
T |
|
| Q |
464 |
tcccatgataaaattggtttcttttcttgctcaatattggaatgagattcaggtacattaatttgtactgaaccttccatagctatt |
550 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| |||||| || | ||||||||| |||||| |
|
|
| T |
35623091 |
tcccatgataaccttggtttattttcttgctcaatattggaacgagattcaggtacatcaatttgcaccggaccttccattgctatt |
35623177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 8e-78; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 180 - 474
Target Start/End: Complemental strand, 37600052 - 37599764
Alignment:
| Q |
180 |
tgatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaaggatgtgtgtcccaagaccaagaagatcttgggagtttgcatatatc |
279 |
Q |
| |
|
||||||||||| || |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
37600052 |
tgatgaatgtgttaacacattcaagattccagttagaaatgattgtgtttgaagggtgtgtgtcccaagaccaagaagatctctagagtttgcaaatatc |
37599953 |
T |
|
| Q |
280 |
agaagatgaagtgcatgttgaatttgtgtttgtgtttgtgtttgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaatgattgttgtgca |
379 |
Q |
| |
|
||| |||| ||| |||| ||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
37599952 |
agaggatggagtacatgatgaatttgtgtttgtgtctatg------caatgccattttgggtaattatcagtgtaaatgcttataaatgactcttgtgca |
37599859 |
T |
|
| Q |
380 |
tcaaagaacatggctactgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctataattacatcccatgataa |
474 |
Q |
| |
|
||||||||||| || | |||||||||||||||||| || |||||||| || ||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
37599858 |
tcaaagaacatagcaattgctacaagaacagcttgaaataaatccattcaaccaaaatttgataaaaaaatttctataatttcatcccatgataa |
37599764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 267 - 384
Target Start/End: Complemental strand, 37605591 - 37605482
Alignment:
| Q |
267 |
gtttgcatatatcagaagatgaagtgcatgttgaatttgtgtttgtgtttgtgtttgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaa |
366 |
Q |
| |
|
||||||| |||||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | |||| |
|
|
| T |
37605591 |
gtttgcaaatatcagaggatggagtgcatgatgaatttgtgt--------gtgtttgtgcagtgccattttgggtaattatcaaggtaaatgcctgtgaa |
37605500 |
T |
|
| Q |
367 |
tgattgttgtgcatcaaa |
384 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37605499 |
tgattgttgtgcatcaaa |
37605482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 10404264 - 10404054
Alignment:
| Q |
15 |
aaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagacgaatcagc |
114 |
Q |
| |
|
|||||||||||||||||||||| | |||| || || ||||||||||| || | |||||| | || | |||||||||||| |||| || | |||||| |
|
|
| T |
10404264 |
aaatccaaacattggttgaaaacacaatgatgattgaggttattgacatcgataaacaagagataatcaacatgttttttcttccaagggatgtatcagc |
10404165 |
T |
|
| Q |
115 |
taatgctgcaaggaaaaaagaaccaagaagacaacctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatga |
214 |
Q |
| |
|
||| | || | ||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||| | || |||||||||||| |||| ||| |
|
|
| T |
10404164 |
taaagtagctaatgcaaaagaaccaattaggcaacctatgaagaatgaagattgtggtaaacctgtgatgaagctacttgcacattcaagactccattga |
10404065 |
T |
|
| Q |
215 |
gaaatgattgt |
225 |
Q |
| |
|
|| |||||||| |
|
|
| T |
10404064 |
gatatgattgt |
10404054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 10403972 - 10403887
Alignment:
| Q |
322 |
tgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacatggctactgctacaagaa |
407 |
Q |
| |
|
|||||| |||||| ||||||||| || |||||||| ||||||||||||||||||| || |||||||| || | || |||||||| |
|
|
| T |
10403972 |
tgtgcaatgccatgttgggtaatcgtcggtgtaaattgttatgaatgattgttgtgcgtcgaagaacattgcgaatgatacaagaa |
10403887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 10378275 - 10378074
Alignment:
| Q |
15 |
aaatccaaacattggttgaaaagattatgagcatggaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagacgaatcagc |
114 |
Q |
| |
|
|||||||||||||||| || || | ||||| || |||| ||| |||||||| | |||||| | | |||||||| |||||||||| || | |||||| |
|
|
| T |
10378275 |
aaatccaaacattggtagagaaaacaatgagaatagaagctatagacattgataaacaagacataacaagcatgttctttctaccaagtgatgtatcagc |
10378176 |
T |
|
| Q |
115 |
taatgctgcaaggaaaaaagaaccaagaagacaacctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatga |
214 |
Q |
| |
|
||| | ||| || | ||| ||||| | ||||||||| || ||||| || ||||| |||||||| || | || | ||||||||||||||| |||| ||| |
|
|
| T |
10378175 |
taaagttgctagaagaaacgaaccgaaaagacaaccaatgaagaacgacgattgaggtaaacctgttacaaaactactagcacattcaagactccattga |
10378076 |
T |
|
| Q |
215 |
ga |
216 |
Q |
| |
|
|| |
|
|
| T |
10378075 |
ga |
10378074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University