View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_9 (Length: 602)
Name: NF20242_low_9
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 14 - 392
Target Start/End: Complemental strand, 2956305 - 2955927
Alignment:
| Q |
14 |
agacgaagaaacaaaccaagaaccgcactcaaaggcacccaaatacaactccctagcatactatcggttccaacagatagtatgttccacaaccacttgt |
113 |
Q |
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| T |
2956305 |
agacgaagaaacaaaccaagaaccgcactcaaaggcacccaaatacaactccctagcatactatcggttccaacagatagtatgttccacaaccacttgt |
2956206 |
T |
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| Q |
114 |
aatgggaacccggatggaacgataagctatttcatccaatcaaagaaattgaagcacattgattaatgtttaaaccatttcatcaagatagaagcttttg |
213 |
Q |
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| T |
2956205 |
aatgggaacccggatggaacgataagctatttcatccaatcaaagaaattgaagcacattgattaatgtttaaaccgtttcatctagatagaagcttttg |
2956106 |
T |
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| Q |
214 |
taccaaggacaacaaataacataatcagttaacagccaaatcatcttatcaatgctttaaagccaaatcatttggatgatgagcacaagcatggattgtc |
313 |
Q |
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| T |
2956105 |
taccaaggacaacaaataacataatcagttaacagccaaatcatcttatcaatgctttaaagccaaatcatttggatgatgagcacaagcatggattgtc |
2956006 |
T |
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| Q |
314 |
tcaaaacggaatcaacaatacattatcattcatatgaacccaatatattcactaatagaagaaaatgtatttgaggaat |
392 |
Q |
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| T |
2956005 |
tcaaaacggaatcaacaatacattatcattcatatgaacccaatatattcactagtagaagaaaatgtatttgaggaat |
2955927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 390 - 587
Target Start/End: Complemental strand, 2955836 - 2955639
Alignment:
| Q |
390 |
aatacatgttatgcgcgaaaactcctgcaaaatagagcaggttatgcacgacattatcttgacggtcttaattatacaaggaattcataccattggacca |
489 |
Q |
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| T |
2955836 |
aatacatgttatgcgcgaaaactcctgcaaaatagagcaggttatgcacgacattatctcgacggtcttaattatacaaggaattcataccattggacca |
2955737 |
T |
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| Q |
490 |
tttgaaattccagtatatatactcagctcaagatttacaagaaaacaaagagacaacacttacaagaaacttcggagggaaaagggattcttggtatt |
587 |
Q |
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| T |
2955736 |
tttgaaattccagtatatatactcagctcaagatttacaagaaaacaaagagacaacacttacaagaaacttcggagggaaaagggattcttggtatt |
2955639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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