View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20243_high_1 (Length: 774)

Name: NF20243_high_1
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20243_high_1
NF20243_high_1
[»] chr3 (10 HSPs)
chr3 (433-764)||(47935304-47935635)
chr3 (16-332)||(47934939-47935251)
chr3 (567-764)||(47928004-47928201)
chr3 (567-764)||(47946580-47946777)
chr3 (567-635)||(47918242-47918310)
chr3 (384-419)||(47677523-47677558)
chr3 (383-421)||(55337-55375)
chr3 (383-421)||(20807937-20807975)
chr3 (386-423)||(49350283-49350320)
chr3 (383-420)||(54308454-54308491)
[»] chr8 (3 HSPs)
chr8 (384-421)||(33322214-33322251)
chr8 (383-421)||(202577-202615)
chr8 (383-421)||(317414-317452)
[»] chr5 (2 HSPs)
chr5 (383-421)||(27345929-27345967)
chr5 (383-421)||(35524122-35524160)
[»] chr2 (1 HSPs)
chr2 (383-421)||(18537503-18537541)
[»] chr1 (3 HSPs)
chr1 (383-421)||(16449555-16449593)
chr1 (383-421)||(16459129-16459167)
chr1 (383-421)||(26240881-26240919)
[»] chr7 (1 HSPs)
chr7 (384-421)||(33261424-33261461)
[»] chr4 (2 HSPs)
chr4 (384-421)||(34941502-34941539)
chr4 (394-423)||(52534988-52535017)


Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-175; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 433 - 764
Target Start/End: Original strand, 47935304 - 47935635
Alignment:
Q  433 gaaattgcaagttccagaaatattagtgcatgtagttttattgttcgtcaaaaacattctaatatccaatatataaaacataaatgtgagtatttaatat 532  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  47935304 gaaattgcaagttccagaaatattagtgcatttagttttattgttcgtcaaaaacattctagcatccaatatataaaacataaatgtgagtatttaatat 47935403  T
Q  533 gtgggttcaaggacaataattatttcttccctcccctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggt 632  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47935404 gtgggttcaaggacaataattatttcttccctcccctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacaatatggt 47935503  T
Q  633 tctgcagcataagtagttacatatgctggatatttgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccac 732  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47935504 tctgcagcataagtagttacatatgctggatatttgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccac 47935603  T
Q  733 ttgcttcttctccactacccatctgtgctcct 764  Q
    ||||||||||||||||||||||||||| ||||    
T  47935604 ttgcttcttctccactacccatctgtgttcct 47935635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 47934939 - 47935251
Alignment:
Q  16 gatttggcgcactacgctttggtccatttgaaaggctaagaatgatcttaatttcgcttcgatgtgctccaaggcggcggatgtggtggagtggaatcaa 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47934939 gatttggcgcactacgctttggtccattttaaaggctaagaatgatcttaatttcgcttcgatgtgctccaaggcggcggatgtggtggagtggaatcaa 47935038  T
Q  116 ttaagtgtttgtcgtggaatcggtatatggggaaaggggtgagctatccatatttgtattatttgactggcacattaactctttgaaatgtattggtagg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47935039 ttaagtgtttgtcgtggaatcggtatatggggaaaggggtgagctatccatgtttgtattatttgactggcacattaactctttgaaatgtattggtagg 47935138  T
Q  216 tagtttttggtggtttgctttgttcgatttttgcatagtagagtactattggtgcttcatatgttgttttagttagagtaccactcacttgtactctttt 315  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    |||||||||||||||    
T  47935139 tagtttttggtggtttgctttgttcgttttttgcatagtagagtactattggtgcttcatctgttgttttagttagactac----cacttgtactctttt 47935234  T
Q  316 ttttgtccgattttaat 332  Q
    |||||||||||||||||    
T  47935235 ttttgtccgattttaat 47935251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 567 - 764
Target Start/End: Original strand, 47928004 - 47928201
Alignment:
Q  567 cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcataagtagttacatatgctggatatt 666  Q
    |||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||  ||| ||||| ||| |||||| |    
T  47928004 cctccaaagtagaatacaggatcttttccatatggagcgtcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatact 47928103  T
Q  667 tgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgctcct 764  Q
    | ||||||| ||||||||| |||||||| ||| | |  ||||||||||||  ||||||||||||||||||| | ||||||||||||||||||| ||||    
T  47928104 taagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcatctccactacccatctgtgttcct 47928201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 567 - 764
Target Start/End: Original strand, 47946580 - 47946777
Alignment:
Q  567 cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcataagtagttacatatgctggatatt 666  Q
    ||||||||| | || |||||||||| ||||||| || | || |||||||||||||||||||| |||||||| ||||| ||| ||||| ||  |||||| |    
T  47946580 cctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatact 47946679  T
Q  667 tgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgctcct 764  Q
    |||||| || |||||||||||||||||| |||||  | ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  47946680 tgagagtttctgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcct 47946777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 567 - 635
Target Start/End: Original strand, 47918242 - 47918310
Alignment:
Q  567 cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttct 635  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||| |||||||||    
T  47918242 cctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggttct 47918310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 419
Target Start/End: Complemental strand, 47677558 - 47677523
Alignment:
Q  384 gtgagggacataattgaaccctcatcctagaatcca 419  Q
    ||||||||| ||||||||||||||||||||||||||    
T  47677558 gtgagggacttaattgaaccctcatcctagaatcca 47677523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 55337 - 55375
Alignment:
Q  383 ggtgagggacataattgaaccctcatcctagaatccacc 421  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  55337 ggtgagggacttaattgaaccctcatcctagaattcacc 55375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 20807975 - 20807937
Alignment:
Q  383 ggtgagggacataattgaaccctcatcctagaatccacc 421  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  20807975 ggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 49350283 - 49350320
Alignment:
Q  386 gagggacataattgaaccctcatcctagaatccaccgt 423  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  49350283 gagggacttaattgaaccctcaccctagaatccaccgt 49350320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 420
Target Start/End: Complemental strand, 54308491 - 54308454
Alignment:
Q  383 ggtgagggacataattgaaccctcatcctagaatccac 420  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  54308491 ggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 33322214 - 33322251
Alignment:
Q  384 gtgagggacataattgaaccctcatcctagaatccacc 421  Q
    |||||||| |||||||||||||||||||||||||||||    
T  33322214 gtgagggatataattgaaccctcatcctagaatccacc 33322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 202615 - 202577
Alignment:
Q  383 ggtgagggacataattgaaccctcatcctagaatccacc 421  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  202615 ggtgagggacttaattgaaccctcatcctagaattcacc 202577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 317452 - 317414
Alignment:
Q  383 ggtgagggacataattgaaccctcatcctagaatccacc 421  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  317452 ggtgagggacttaattgaaccctcatcctagaattcacc 317414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 27345929 - 27345967
Alignment:
Q  383 ggtgagggacataattgaaccctcatcctagaatccacc 421  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  27345929 ggtgagggacttaattgaaccctcaccctagaatccacc 27345967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 35524160 - 35524122
Alignment:
Q  383 ggtgagggacataattgaaccctcatcctagaatccacc 421  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  35524160 ggtgagggacttaattgaactctcatcctagaatccacc 35524122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 18537503 - 18537541
Alignment:
Q  383 ggtgagggacataattgaaccctcatcctagaatccacc 421  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  18537503 ggtgagggacttaattgaaccctcatcatagaatccacc 18537541  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 16449593 - 16449555
Alignment:
Q  383 ggtgagggacataattgaaccctcatcctagaatccacc 421  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  16449593 ggtgagggacttaattgaaccctcaccctagaatccacc 16449555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 16459167 - 16459129
Alignment:
Q  383 ggtgagggacataattgaaccctcatcctagaatccacc 421  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  16459167 ggtgagggacttaattgaaccctcaccctagaatccacc 16459129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 26240881 - 26240919
Alignment:
Q  383 ggtgagggacataattgaaccctcatcctagaatccacc 421  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  26240881 ggtgagggacttaattgaaccctcaccctagaatccacc 26240919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 33261424 - 33261461
Alignment:
Q  384 gtgagggacataattgaaccctcatcctagaatccacc 421  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  33261424 gtgagggacttaattggaccctcatcctagaatccacc 33261461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 34941539 - 34941502
Alignment:
Q  384 gtgagggacataattgaaccctcatcctagaatccacc 421  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  34941539 gtgagggacttaattgaaccctcaccctagaatccacc 34941502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 423
Target Start/End: Complemental strand, 52535017 - 52534988
Alignment:
Q  394 taattgaaccctcatcctagaatccaccgt 423  Q
    ||||||||||||||||||||||||||||||    
T  52535017 taattgaaccctcatcctagaatccaccgt 52534988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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