View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20243_high_13 (Length: 277)
Name: NF20243_high_13
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20243_high_13 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0083 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 50466 - 50204
Alignment:
| Q |
1 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50466 |
aactgttcagaccttagttgagaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaaca |
50367 |
T |
|
| Q |
101 |
acacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
50366 |
acacttctcactcttcaagttgtgctggatgatgctgaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtct |
50267 |
T |
|
| Q |
201 |
ttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaatg |
263 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
50266 |
ttgatgctgaggacttgctcagcgaaatcagttatgattccctgcgatgcaaggtggagaatg |
50204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 33)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 10580009 - 10580270
Alignment:
| Q |
1 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10580009 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagcttaaaaca |
10580108 |
T |
|
| Q |
101 |
acacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatct |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580109 |
acactgctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaataatcctgctgtcaaactatggcttgatgacttgaaagatgctatca |
10580208 |
T |
|
| Q |
201 |
ttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaat |
262 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10580209 |
ttgatgctgaggacttgctcaatgaaatcagttacgattccctgcgatgcaaggtggagaat |
10580270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 10376506 - 10376244
Alignment:
| Q |
1 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| | |||||| |
|
|
| T |
10376506 |
aactgttcagaccttagttgagaaacttgcttcaacagagtttcttgattacatcaaaaacaccaaactcaatgtctcactcttgaggcagttaaaaaca |
10376407 |
T |
|
| Q |
101 |
acacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatct |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
10376406 |
acactgctcactcttcaagttgtgctggatgatgcagaggagaagcagatcatcaatccttctgtcaagcaatggcttgatgacttgaaagatgctatct |
10376307 |
T |
|
| Q |
201 |
ttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaatg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10376306 |
ttgatgctgaggacttgctcaatgaaatcagttatgattccctgcgatgcaaggtggagaatg |
10376244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 10434705 - 10434444
Alignment:
| Q |
1 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaaca |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10434705 |
aactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacatcaaaaacaccaagctcaatgactcactcttgaggcagctgaaaaca |
10434606 |
T |
|
| Q |
101 |
acacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
10434605 |
acacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaaacctgctgtcaaacaatggcttgatgacttgaaagatgctgtct |
10434506 |
T |
|
| Q |
201 |
ttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaat |
262 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
10434505 |
ttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatccaaggtggagaat |
10434444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 10088198 - 10088460
Alignment:
| Q |
1 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaaca |
100 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
10088198 |
aactattcagaccttggttgagaaacttgcttcaacagagtttcgtgattacatcaaaaacaccaagttgaatgtctcactctcgaggcagctgaaaaca |
10088297 |
T |
|
| Q |
101 |
acacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatct |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10088298 |
acactgctcactcttcaagttgtgctggatgatgcggaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtct |
10088397 |
T |
|
| Q |
201 |
ttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaatg |
263 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
10088398 |
ttgatgctgaggacttgctcagcgaaatcagttatgattcccttcgatgcaaggtggagaatg |
10088460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 10195081 - 10195343
Alignment:
| Q |
1 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaaca |
100 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
10195081 |
aactattcagaccttggttgagaaacttgcttcaacagagtttcgtgattacatcaaaaacaccaagttgaatgtctcactcttgaggcagctgaaaaca |
10195180 |
T |
|
| Q |
101 |
acacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatct |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10195181 |
acactgctcactcttcaagttgtgctggatgatgcggaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtct |
10195280 |
T |
|
| Q |
201 |
ttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaatg |
263 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
10195281 |
ttgatgctgaggacttgttcagcgaaatcagttatgattcccttcgatgcaaggtggagaatg |
10195343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 10364459 - 10364209
Alignment:
| Q |
1 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||||||||||||| | ||||| |
|
|
| T |
10364459 |
aactgttcagaccttagttgagaaacttgcttcaacagagtttcttgattacatcaaaaacaccaaactcaatgactcactcttgaggcagttacaaaca |
10364360 |
T |
|
| Q |
101 |
acacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatct |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||| |
|
|
| T |
10364359 |
acactgctcactcttcaagttgtgctggatgacgcagaagagaagcagatcaacaatcctgctgtcaaacaatggcttgatggcttgaaagatgctgtct |
10364260 |
T |
|
| Q |
201 |
ttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgca |
251 |
Q |
| |
|
||||||| ||||| ||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
10364259 |
ttgatgccgaggatttgcttcacgaaatcagttatgattccctgcgatgca |
10364209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 9838269 - 9838531
Alignment:
| Q |
1 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || || |
|
|
| T |
9838269 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcgtgattacatcaaaaacactaagctcaatgtctcactcttgaggcagttacaagca |
9838368 |
T |
|
| Q |
101 |
acacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatct |
200 |
Q |
| |
|
|| | |||| |||||| | ||| || ||||||||||||||||||||||||| |||||| | |||||||| ||||||||| |||||||||||| | ||| |
|
|
| T |
9838369 |
accatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtct |
9838468 |
T |
|
| Q |
201 |
ttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaatg |
263 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
9838469 |
ttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatg |
9838531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 9849147 - 9849409
Alignment:
| Q |
1 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || || |
|
|
| T |
9849147 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcgtgattacatcaaaaacactaagctcaatgtctcactcttgaggcagttacaagca |
9849246 |
T |
|
| Q |
101 |
acacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatct |
200 |
Q |
| |
|
|| | |||| |||||| | ||| || ||||||||||||||||||||||||| |||||| | |||||||| ||||||||| |||||||||||| | ||| |
|
|
| T |
9849247 |
accatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtct |
9849346 |
T |
|
| Q |
201 |
ttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaatg |
263 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
9849347 |
ttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatg |
9849409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 11768659 - 11768902
Alignment:
| Q |
18 |
ttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttca |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||||| || ||||| ||||| |
|
|
| T |
11768659 |
ttgagaaacttgcttcaacagagtttcttgattacatcaaaaacaccaagctgaatgtctcactcttgaggcaattaaaaacaaccctgctcacacttca |
11768758 |
T |
|
| Q |
118 |
agttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgatgctgaggacttg |
217 |
Q |
| |
|
| ||| ||||||||||| |||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
11768759 |
ggctgtactggatgatgcggaggagaagcagatgaacaatcttgctgtcaaacaatggcttgatgacttgaaagacgctatctttgatgctgaggattta |
11768858 |
T |
|
| Q |
218 |
ctcaatgaaataagttatgattccctgcgatgcaaggtggagaa |
261 |
Q |
| |
|
||| || ||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
11768859 |
ctcgatcaaataagttatgactccctccgatgcaagatggagaa |
11768902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 10076674 - 10076936
Alignment:
| Q |
1 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || ||||| |||||||| || ||| | ||||| |
|
|
| T |
10076674 |
aactgttcagaccttagttgagaaacttacttcaactgagtttcttgattacatcaaaaacacaaatctgaatgtatcactcttcagacagttacaaaca |
10076773 |
T |
|
| Q |
101 |
acacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatct |
200 |
Q |
| |
|
|| | |||| |||||| | ||| || ||||||||||||||||||||||||| |||||| | ||||| || ||||||||| |||||||||||||| ||| |
|
|
| T |
10076774 |
accatgctcaatcttcaggctgtactagatgatgcagaggagaagcagatcagcaatccccatgtcagacagtggcttgataacttgaaagatgctgtct |
10076873 |
T |
|
| Q |
201 |
ttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaatg |
263 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
10076874 |
ttgatgccgaggacttgctcaacgaaatcagttacgattcactgcgatgcaaggtggagaatg |
10076936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 11149486 - 11149254
Alignment:
| Q |
30 |
cttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga |
129 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||| ||||| |||||||||||||||| |||| | |||||||||| || |||||||| ||||||||| |
|
|
| T |
11149486 |
cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacactgctggttcttcaagctgtgctgga |
11149387 |
T |
|
| Q |
130 |
tgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgatgctgaggacttgctcaatgaaata |
229 |
Q |
| |
|
|||||| || ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||| |
|
|
| T |
11149386 |
tgatgctgatgagaagcagatcaacaatcctgctgtcaaacaatggcttgatgacttgaaagatgctatctttgatgccgaggatttgctgaatcaaatt |
11149287 |
T |
|
| Q |
230 |
agttatgattccctgcgatgcaaggtggagaat |
262 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| |
|
|
| T |
11149286 |
agttatgaatcactgcgatgcaaggtggagaat |
11149254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 11131658 - 11131426
Alignment:
| Q |
30 |
cttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga |
129 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||| ||||| |||||||||||||||| |||| | |||||||||| || |||||||| ||||||||| |
|
|
| T |
11131658 |
cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacactgctggttcttcaagctgtgctgga |
11131559 |
T |
|
| Q |
130 |
tgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgatgctgaggacttgctcaatgaaata |
229 |
Q |
| |
|
|||||| |||||||||||||||||||| | | |||||||| |||| ||||||||||||||||||||||||||||||| ||||| ||||| ||| |||| |
|
|
| T |
11131558 |
tgatgctgaggagaagcagatcaacaaccgtgctgtcaaaaaatgggttgatgacttgaaagatgctatctttgatgcggaggatttgctgaatcaaatt |
11131459 |
T |
|
| Q |
230 |
agttatgattccctgcgatgcaaggtggagaat |
262 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| |
|
|
| T |
11131458 |
agttatgagtcactgcgatgcaaggtggagaat |
11131426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 30 - 259
Target Start/End: Original strand, 8860723 - 8860952
Alignment:
| Q |
30 |
cttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga |
129 |
Q |
| |
|
||||||| ||||||| ||||| |||||| |||| ||||| || ||||||||||||| |||| | || |||| || || |||||||| ||||||||| |
|
|
| T |
8860723 |
cttcaaccgagtttcgtgatttcatcaacaacagaaagctgaacgtctcactcttgaagcagttacaagcaacgctgctggttcttcaagctgtgctgga |
8860822 |
T |
|
| Q |
130 |
tgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgatgctgaggacttgctcaatgaaata |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
8860823 |
tgatgcagaggagaagcagatcaacaatcgtgctgtcaaacaatggcttgatgacttgaaagatgctctctttgatgctgaggatttgctcaaccaaatc |
8860922 |
T |
|
| Q |
230 |
agttatgattccctgcgatgcaaggtggag |
259 |
Q |
| |
|
||||||||||| | ||||||||||||||| |
|
|
| T |
8860923 |
agttatgattcattacgatgcaaggtggag |
8860952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 10888743 - 10888975
Alignment:
| Q |
30 |
cttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga |
129 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||| ||||| |||||||||||||||| |||| | ||||||| || || |||||||| ||||||||| |
|
|
| T |
10888743 |
cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacgctgctggttcttcaagctgtgctgga |
10888842 |
T |
|
| Q |
130 |
tgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgatgctgaggacttgctcaatgaaata |
229 |
Q |
| |
|
|||||| |||||||||||||||||||| | | ||||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||| || |||| |
|
|
| T |
10888843 |
tgatgctgaggagaagcagatcaacaaccgtgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgcggaggatttgctgaaccaaatt |
10888942 |
T |
|
| Q |
230 |
agttatgattccctgcgatgcaaggtggagaat |
262 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |
|
|
| T |
10888943 |
agttatgaatcattgcgatgcaaggtggagaat |
10888975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 262
Target Start/End: Complemental strand, 11160676 - 11160417
Alignment:
| Q |
3 |
ctgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaac |
102 |
Q |
| |
|
||||||| ||| || |||| ||||| ||||||| ||||||| ||||| |||||| || | ||| | |||||||||||||||| |||| | ||||||| |
|
|
| T |
11160676 |
ctgttcaaaccatacttgacaaactatcttcaaccgagtttcgtgatttcatcaacaataagaagttgaatgtctcactcttgaagcagttacaaacaac |
11160577 |
T |
|
| Q |
103 |
acttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatcttt |
202 |
Q |
| |
|
| || ||| |||| ||||||||||||||||||||||||| |||||||||| | | ||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
11160576 |
gttgctggttctacaagctgtgctggatgatgcagaggagaagtagatcaacaaccgtgctgtcaaacaatggcttgatgacttgaaagatgctgtcttt |
11160477 |
T |
|
| Q |
203 |
gatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaat |
262 |
Q |
| |
|
||||| ||||| ||||| ||| |||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
11160476 |
gatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggagaat |
11160417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 13289074 - 13289333
Alignment:
| Q |
2 |
actgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaa |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| ||| |||||||||| || || |||||| |
|
|
| T |
13289074 |
actgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatcagaaacaacaagctgaattcctcactcttggcagagttggaaacaa |
13289173 |
T |
|
| Q |
102 |
cacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctt |
201 |
Q |
| |
|
|||| ||| ||||||| || ||||||||||||||||| |||||| |||| ||| || ||||||||| |||| | ||| | |||||||||| |||| |
|
|
| T |
13289174 |
cactactcgctcttcaggtggtgctggatgatgcagaactgaagcaaatcaccaacactgctgtcaaacaatggttggatcagctgaaagatgcaatcta |
13289273 |
T |
|
| Q |
202 |
tgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaa |
261 |
Q |
| |
|
|||||||||||| ||||| || |||| | ||| || ||||||||||| ||||||||||| |
|
|
| T |
13289274 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaaggtggagaa |
13289333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 13332313 - 13332572
Alignment:
| Q |
2 |
actgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaa |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| ||||||||||| |||||| ||||| ||| |||||| ||| || || |||||| |
|
|
| T |
13332313 |
actgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatcagaaacaccaagctgaattcctcactgttggcagagttggaaacaa |
13332412 |
T |
|
| Q |
102 |
cacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctt |
201 |
Q |
| |
|
|||| ||| ||||||| | ||||||||||||||||| ||||||| |||| ||| || ||||||||| |||| | ||| | |||||||||| |||| |
|
|
| T |
13332413 |
cactgctcgctcttcaggcggtgctggatgatgcagaacagaagcaaatcaccaacactgctgtcaaacaatggttggatcagctgaaagatgcaatcta |
13332512 |
T |
|
| Q |
202 |
tgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaa |
261 |
Q |
| |
|
|||||||||||| ||||| || |||| | ||| || ||||||||||| ||||||||||| |
|
|
| T |
13332513 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaaggtggagaa |
13332572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 13160389 - 13160648
Alignment:
| Q |
2 |
actgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaa |
101 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| |||||| ||||||||||| |||||| ||||| ||| |||||| ||| || || |||||| |
|
|
| T |
13160389 |
actgttcagactttagttgcgaaacttgcttcacaagagttttgtgattacatcagaaacaccaagctgaattcctcactgttggcagagttggaaacaa |
13160488 |
T |
|
| Q |
102 |
cacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctt |
201 |
Q |
| |
|
|||| ||| ||||||| || ||||||||||||||||| |||||| |||| ||| || ||||||||| |||| | ||| | |||||||||| |||| |
|
|
| T |
13160489 |
cactgctcgctcttcaggtggtgctggatgatgcagaactgaagcaaatcaccaacactgctgtcaaacaatggatggatcaactgaaagatgcaatcta |
13160588 |
T |
|
| Q |
202 |
tgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaa |
261 |
Q |
| |
|
|||||||||||| ||||| || |||| | ||| || ||||||||||| | ||||||||| |
|
|
| T |
13160589 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtggagaa |
13160648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 13170440 - 13170699
Alignment:
| Q |
2 |
actgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaa |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| ||||||||||| |||||| ||||| ||| |||||| ||| || || |||||| |
|
|
| T |
13170440 |
actgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatcagaaacaccaagctgaattcctcactgttggcagagttggaaacaa |
13170539 |
T |
|
| Q |
102 |
cacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctt |
201 |
Q |
| |
|
|||| ||| ||||||| | || || ||||||||||| ||||||| |||| ||| || ||||||||| |||| | ||| | |||||||||| |||| |
|
|
| T |
13170540 |
cactgctcgctcttcaggcggttcttgatgatgcagaacagaagcaaatcaccaacactgctgtcaaacaatggatggatcaactgaaagatgcaatcta |
13170639 |
T |
|
| Q |
202 |
tgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaa |
261 |
Q |
| |
|
|||||||||||| ||||| || |||| | ||| || ||||| ||||| ||||||||||| |
|
|
| T |
13170640 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctccgatgtaaggtggagaa |
13170699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 219
Target Start/End: Original strand, 10516988 - 10517114
Alignment:
| Q |
93 |
tgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaaga |
192 |
Q |
| |
|
||||||||||||| | ||||||||| |||||||| |||||||||| |||| ||| |||| ||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
10516988 |
tgaaaacaacactgtttgctcttcaagctgtgctggttgatgcagagcagaaacagttcaatgatcttcctgtcaaacaatggcttgatgacttgaaaga |
10517087 |
T |
|
| Q |
193 |
tgctatctttgatgctgaggacttgct |
219 |
Q |
| |
|
||| ||||||||| |||| || ||||| |
|
|
| T |
10517088 |
tgcaatctttgattctgaagatttgct |
10517114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 11782548 - 11782422
Alignment:
| Q |
93 |
tgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaaga |
192 |
Q |
| |
|
||||||||||||| | ||||||||| |||||||| |||||||||| |||| ||| |||| ||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
11782548 |
tgaaaacaacactgtttgctcttcaagctgtgctggttgatgcagagcagaaacagttcaaagatcttcctgtcaaacaatggcttgatgacttgaaaga |
11782449 |
T |
|
| Q |
193 |
tgctatctttgatgctgaggacttgct |
219 |
Q |
| |
|
||| || ||||||||||| || ||||| |
|
|
| T |
11782448 |
tgcaatatttgatgctgaagatttgct |
11782422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 10084150 - 10084218
Alignment:
| Q |
23 |
aaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcag |
91 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
10084150 |
aaacttgcttcaacagattttcttgattacatcaaaaacaccaagccaaatgtctcactcttgaggcag |
10084218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 13343498 - 13343757
Alignment:
| Q |
2 |
actgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaa |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| ||||||||| | |||||| ||||| ||| ||| || || || || |||||| |
|
|
| T |
13343498 |
actgttcagactttagttgagaaacttgcttcacaagagttttgtgattacataagaaacaccaagctgaattcctcgctgtttgcagagttggaaacaa |
13343597 |
T |
|
| Q |
102 |
cacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctt |
201 |
Q |
| |
|
|||| ||| ||||||| | ||||||||||||||||| | ||||| |||| ||| || ||||||||| |||| | ||| | |||||||||| |||| |
|
|
| T |
13343598 |
cactgctcgctcttcaggcggtgctggatgatgcagaacataagcaaatcaccaacactgctgtcaaacaatggttggatcagctgaaagatgcaatcta |
13343697 |
T |
|
| Q |
202 |
tgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaa |
261 |
Q |
| |
|
|||||||||||| ||||| || |||| | || || ||||||||||| | ||||||||| |
|
|
| T |
13343698 |
tgatgctgaggatttgcttaaccaaatcaactacgactccctgcgatgtacggtggagaa |
13343757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 10085622 - 10085735
Alignment:
| Q |
107 |
ctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgatg |
206 |
Q |
| |
|
|||| |||||| | ||| || ||||||||| ||||||||||||||| ||||| | |||||||| ||||||||| |||||||||||| | ||||||||| |
|
|
| T |
10085622 |
ctcaatcttcaggctgtactagatgatgcaaaggagaagcagatcagtaatccccatgtcaaacagtggcttgataacttgaaagatgttttctttgatg |
10085721 |
T |
|
| Q |
207 |
ctgaggacttgctc |
220 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
10085722 |
ctgaagatttgctc |
10085735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 10191073 - 10191138
Alignment:
| Q |
23 |
aaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgagg |
88 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
10191073 |
aaacttgcttcaacagattttcttgattacatcaaaaacaccaagccaaatgtctcactcttgagg |
10191138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 10192542 - 10192655
Alignment:
| Q |
107 |
ctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgatg |
206 |
Q |
| |
|
|||| |||||| | ||| || ||||||||| ||||||||||||||| ||||| | |||||||| ||||||||| |||||||||||| | ||||||||| |
|
|
| T |
10192542 |
ctcaatcttcaggctgtactagatgatgcaaaggagaagcagatcagtaatccccatgtcaaacagtggcttgataacttgaaagatgttttctttgatg |
10192641 |
T |
|
| Q |
207 |
ctgaggacttgctc |
220 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
10192642 |
ctgaagatttgctc |
10192655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10505193 - 10505250
Alignment:
| Q |
1 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaa |
58 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
10505193 |
aactgttcagaccttagttgacaaacttgcttcaacagagtttcgtgattacatcaaa |
10505250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 261
Target Start/End: Original strand, 10500077 - 10500245
Alignment:
| Q |
93 |
tgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaaga |
192 |
Q |
| |
|
|||||||||||||| | ||||||||| ||| || | |||||||||| |||| || ||| ||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
10500077 |
tgaaaacaacactttttgctcttcaagctgttctagttgatgcagagcagaaacaattcactgatcttcctgtcaaacaatggcttgatgacttgaaaga |
10500176 |
T |
|
| Q |
193 |
tgctatctttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaa |
261 |
Q |
| |
|
| |||||||||||||| || |||||| | |||||| |||| |||| |||| ||||| ||||||| |
|
|
| T |
10500177 |
cacaatctttgatgctgaagatttgctcgacttaataagctatgcttccttgcggcgcaagctggagaa |
10500245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 10526877 - 10526985
Alignment:
| Q |
111 |
ctcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgatgctga |
210 |
Q |
| |
|
||||||||| |||||||| |||||||||| |||| ||| ||| | | ||||||||||| ||||||| |||||||||||||||| || ||||||||||| |
|
|
| T |
10526877 |
ctcttcaagctgtgctggttgatgcagagcagaaacagttcactgaccttcctgtcaaacaatggcttcatgacttgaaagatgcaatatttgatgctga |
10526976 |
T |
|
| Q |
211 |
ggacttgct |
219 |
Q |
| |
|
|| ||||| |
|
|
| T |
10526977 |
agatttgct |
10526985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 10541492 - 10541600
Alignment:
| Q |
111 |
ctcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgatgctga |
210 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||| ||| ||| | | ||||||||| | |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10541492 |
ctcttcaatctgtgctggttgatgcagagcagaaacagttcattgaccttcctgtcaagcaatggcttgatgacttgaaagatgcaatctttgatgctga |
10541591 |
T |
|
| Q |
211 |
ggacttgct |
219 |
Q |
| |
|
|| ||||| |
|
|
| T |
10541592 |
agatttgct |
10541600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 261
Target Start/End: Original strand, 10126433 - 10126584
Alignment:
| Q |
110 |
actcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgatgctg |
209 |
Q |
| |
|
|||||| | ||||| || |||||||||||||||||||||||| ||| || |||||| |||||| ||| || |||||||| |||| |||||||| |
|
|
| T |
10126433 |
actcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaaacaatggctggatcggttaaaagatgcaatctatgatgctg |
10126532 |
T |
|
| Q |
210 |
aggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaa |
261 |
Q |
| |
|
|||| ||||||||| |||| || || || |||| ||||||||| ||||||| |
|
|
| T |
10126533 |
aggatttgctcaatcaaatcagctacaatgccctacgatgcaagctggagaa |
10126584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 261
Target Start/End: Original strand, 10260203 - 10260354
Alignment:
| Q |
110 |
actcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgatgctg |
209 |
Q |
| |
|
|||||| | ||||| || |||||||||||||||||||||||| ||| || |||||| |||| | ||| || |||||||| |||| |||||||| |
|
|
| T |
10260203 |
actcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaaacaatggttggatcggttaaaagatgcaatctatgatgctg |
10260302 |
T |
|
| Q |
210 |
aggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaa |
261 |
Q |
| |
|
|||| ||||||||| |||| || || || |||| ||||||||| ||||||| |
|
|
| T |
10260303 |
aggatttgctcaataaaatcagctacaatgccctacgatgcaagctggagaa |
10260354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 3884670 - 3884763
Alignment:
| Q |
90 |
agctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatga |
183 |
Q |
| |
|
||||||||| |||||| | | |||||||| |||| || ||||||| ||||||||||| |||| ||| ||| |||||||| |||||| ||||| |
|
|
| T |
3884670 |
agctgaaaataacactgttaagtcttcaagctgtgttgaatgatgctgaggagaagcaaatcaccaaccctgctgtcaaagaatggctggatga |
3884763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 262
Target Start/End: Original strand, 26906308 - 26906566
Alignment:
| Q |
4 |
tgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaaca |
103 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26906308 |
tgttcagactttagttgagaaacttgtttcaacacagtttcttgattacatcaaaaacaccaagctcaatgtctcactcttgaggcagctaaaaacaaca |
26906407 |
T |
|
| Q |
104 |
cttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttg |
203 |
Q |
| |
|
|| |||||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26906408 |
ctgctcactctgcaggttgtgctggatgatgcagaggagaaacagatcaacaatcctgctgtcaaacaatggcttgatgacttgaaagatgctatctttg |
26906507 |
T |
|
| Q |
204 |
atgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaat |
262 |
Q |
| |
|
||| ||||||||||||||| ||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
26906508 |
atgttgaggacttgctcaacgaaattagttatgattccctgcgatgcaaagtcgagaat |
26906566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 3438581 - 3438480
Alignment:
| Q |
14 |
ttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactc |
113 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||||||||||| || ||| | ||| ||||||| ||||||| | | | |||||||| ||||||| |
|
|
| T |
3438581 |
ttagttgagaaacttgcttcatcggattttcttgattacatcaaaaataccaagttaaatatctcacttttgaggccgttcgatacaacactgctcactc |
3438482 |
T |
|
| Q |
114 |
tt |
115 |
Q |
| |
|
|| |
|
|
| T |
3438481 |
tt |
3438480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 31680303 - 31680139
Alignment:
| Q |
98 |
acaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgcta |
197 |
Q |
| |
|
|||||||||||||||||||| | ||| || |||||||| ||| |||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
31680303 |
acaacacttctcactcttcatgctgttcttgatgatgctgagaagaagcagatcaacaatcttcctgtcaaacaatggcttgatgagttgaaagatgcaa |
31680204 |
T |
|
| Q |
198 |
tctttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaat |
262 |
Q |
| |
|
| | |||||||||||| |||||||| | || |||||||||| ||| || |||||||||||||| |
|
|
| T |
31680203 |
tatatgatgctgaggatttgctcaaccagatcagttatgattgccttagaagcaaggtggagaat |
31680139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 106 - 262
Target Start/End: Complemental strand, 44958265 - 44958109
Alignment:
| Q |
106 |
tctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgat |
205 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||| |||| ||| | | ||||||||| ||||||||||||||||||| || | || |||||| |
|
|
| T |
44958265 |
tctcactcttcaggttgtgcttgatgatgcagaggagaagcaaatcaccaaccttactgtcaaacaatggcttgatgacttgaaaaatacaatatttgat |
44958166 |
T |
|
| Q |
206 |
gctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaat |
262 |
Q |
| |
|
|| ||||| |||||||| |||| || |||||||||||||| ||||| ||||||||| |
|
|
| T |
44958165 |
gccgaggatttgctcaaccaaattagctatgattccctgcgttgcaaagtggagaat |
44958109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 44958339 - 44958256
Alignment:
| Q |
1 |
aactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactctt |
84 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
44958339 |
aactgttcaaaccttagttgagaaacttgcttcaacagagtttcttgattacatcaaaaacaccaagatcaatgtctcactctt |
44958256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 261
Target Start/End: Original strand, 11484520 - 11484685
Alignment:
| Q |
96 |
aaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgc |
195 |
Q |
| |
|
|||||||||| || ||||| | |||||||| ||||||||||| |||||||||||| | || |||||| |||||||||| ||||||||||| |
|
|
| T |
11484520 |
aaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaacccaaaatcaaacaatggcttgatcggttgaaagatgc |
11484619 |
T |
|
| Q |
196 |
tatctttgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaa |
261 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| || |||||| || ||||||||||||| ||||| |
|
|
| T |
11484620 |
aatctttgatgctgaggatttgcttaatgaaatcagctatgatgccttgcgatgcaaggtagagaa |
11484685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 146599 - 146340
Alignment:
| Q |
2 |
actgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaa |
101 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| |||||| ||||||||||| |||||| ||||| ||| |||||| ||| || || |||||| |
|
|
| T |
146599 |
actgttcagactttagttgcgaaacttgcttcacaagagttttgtgattacatcagaaacaccaagctgaattcctcactgttggcagagttggaaacaa |
146500 |
T |
|
| Q |
102 |
cacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctt |
201 |
Q |
| |
|
|||| ||| ||||||| || ||||||||||||||||| |||||| |||| ||| || ||||||||| |||| | ||| | |||||||||| |||| |
|
|
| T |
146499 |
cactgctcgctcttcaggtggtgctggatgatgcagaactgaagcaaatcaccaacactgctgtcaaacaatggatggatcaactgaaagatgcaatcta |
146400 |
T |
|
| Q |
202 |
tgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaa |
261 |
Q |
| |
|
|||||||||||| ||||| || |||| | ||| || ||||||||||| | ||||||||| |
|
|
| T |
146399 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtggagaa |
146340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 136548 - 136289
Alignment:
| Q |
2 |
actgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaa |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| ||||||||||| |||||| ||||| ||| |||||| ||| || || |||||| |
|
|
| T |
136548 |
actgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatcagaaacaccaagctgaattcctcactgttggcagagttggaaacaa |
136449 |
T |
|
| Q |
102 |
cacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctt |
201 |
Q |
| |
|
|||| ||| ||||||| | || || ||||||||||| ||||||| |||| ||| || ||||||||| |||| | ||| | |||||||||| |||| |
|
|
| T |
136448 |
cactgctcgctcttcaggcggttcttgatgatgcagaacagaagcaaatcaccaacactgctgtcaaacaatggatggatcaactgaaagatgcaatcta |
136349 |
T |
|
| Q |
202 |
tgatgctgaggacttgctcaatgaaataagttatgattccctgcgatgcaaggtggagaa |
261 |
Q |
| |
|
|||||||||||| ||||| || |||| | ||| || ||||| ||||| ||||||||||| |
|
|
| T |
136348 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctccgatgtaaggtggagaa |
136289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 17853471 - 17853378
Alignment:
| Q |
111 |
ctcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttga |
204 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||| || ||||| ||| ||||||||||| |||||||||||| |||||||| ||||||||||| |
|
|
| T |
17853471 |
ctcttcaagctgtgctggttgatgcagaacagaaacaattcaacgatcttcctgtcaaacaatggcttgatgatttgaaagacgctatctttga |
17853378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 241
Target Start/End: Original strand, 29836112 - 29836321
Alignment:
| Q |
32 |
tcaactgagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg |
131 |
Q |
| |
|
||||| ||||||| |||||| |||| |||| ||||| ||| ||| ||||||| |||| || |||||||||||||||||||| ||| ||||| | || |
|
|
| T |
29836112 |
tcaacagagtttcaagattacgtcaacaacatgaagctgaatcactctctcttgaagcagttgcaaacaacacttctcactcttgaagcggtgctagttg |
29836211 |
T |
|
| Q |
132 |
atgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatgacttgaaagatgctatctttgatgctgaggacttgctcaatgaaataag |
231 |
Q |
| |
|
|||||||| |||||||||| | |||| ||||| | ||||||| |||| || |||||||| |||| |||| | ||||| ||||| || |||| || |
|
|
| T |
29836212 |
atgcagagaggaagcagatccatgatccggctgtccgagaatggcttaatgatttaaaagatgcaatctatgatacagaggatttgctgaaccaaattag |
29836311 |
T |
|
| Q |
232 |
ttatgattcc |
241 |
Q |
| |
|
||| |||||| |
|
|
| T |
29836312 |
ttacgattcc |
29836321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 19957031 - 19957146
Alignment:
| Q |
6 |
ttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacacta---agctcaatgtctcactcttgaggcagctgaaaacaac |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||| || || ||| || ||||||| ||||| | || || | ||| ||||||| ||||||||| | |||||||| |
|
|
| T |
19957031 |
ttcaaaccttagttgagaaacttgcttccacggaatttttttattacataaaaaaaaatactgagttgaatatctcacttttgaggcagttaaaaacaac |
19957130 |
T |
|
| Q |
103 |
acttctcactcttcaa |
118 |
Q |
| |
|
||| | |||||||||| |
|
|
| T |
19957131 |
actccccactcttcaa |
19957146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 14006026 - 14005933
Alignment:
| Q |
90 |
agctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatcctcctgtcaaactatggcttgatga |
183 |
Q |
| |
|
||||||||| |||||| | | |||||||| |||| || ||||||| ||||||||||| |||| ||| ||| |||||||| |||||| ||||| |
|
|
| T |
14006026 |
agctgaaaataacactgttaagtcttcaagctgtgttgaatgatgctgaggagaagcaaatcaccaaccctgctgtcaaagaatggctggatga |
14005933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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