View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20243_high_2 (Length: 590)
Name: NF20243_high_2
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20243_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 11 - 573
Target Start/End: Original strand, 22364103 - 22364665
Alignment:
| Q |
11 |
attattctcaatactaaaagtcaacaatgcaggacacctcaacaccatacacctagcttcttctttagtaaatcctatactctccaaatgcttaagttta |
110 |
Q |
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| T |
22364103 |
attattctcaatactaaaagtcaacaatgcaggacacctcaacaccatacacctagcctcttctttagtaaatcccagactctccaaatgcttaagttta |
22364202 |
T |
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| Q |
111 |
ggaataattgtcctttcaacattggaaaccaaaagaacacaatcttgataagccaatgcttctaaatctcttaatcctaatctgttaagataaaacaaag |
210 |
Q |
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| T |
22364203 |
ggaataattgtcctttcaacattggaaaccaaaagaacacaatcttgataagccaatgcttctaaatctcttaatcctaatctgttaagataaaacaaag |
22364302 |
T |
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| Q |
211 |
ctggtttaagctgatccaccacactagaagtaagcaatcttggacactttttgataacttttctaaagctatgatcgggcactttaagatcatgtacgag |
310 |
Q |
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| T |
22364303 |
ctggtttaagctgatccaccacactagaagtaagcaatcttggacactttttgataacttttctaaagctatgatcaggcactttaagatcatgtatgag |
22364402 |
T |
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| Q |
311 |
aaaatcaaaaactgggttaagatcagttttgatacttgatgtgagaatcttaggacacatgccaaagattcttggaaggtctttatgttggataccttta |
410 |
Q |
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| T |
22364403 |
aaaatcaaaaactgggttaagatcagttttgatacttgatgtgagaatcttaggacacatgccaaagattcttggaaggtctttatgttggataccttta |
22364502 |
T |
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| Q |
411 |
gagacaagaaatgtgataatggaatgaatggattctaaggtagctgtatgaaggttagggttttgagagagtgctttacctgaatcaatgcccataactt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22364503 |
gagacaagaaatgtgataatggaatgaatggattctaaggtagctgtatgaaggttagggttttgagagagtgctttacctgaatcaatgcccataactt |
22364602 |
T |
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| Q |
511 |
caagacaaagaattttttctttgaattgaagtgagagtttttcattagttggtgtgtaaagtg |
573 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22364603 |
caagacagagaattttttctttgaattgaagtgagagtttttcattagttggtgtgtaaagtg |
22364665 |
T |
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