View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20243_high_4 (Length: 433)

Name: NF20243_high_4
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20243_high_4
NF20243_high_4
[»] chr7 (4 HSPs)
chr7 (22-172)||(38984522-38984671)
chr7 (22-351)||(10582949-10583292)
chr7 (22-119)||(356923-357020)
chr7 (227-289)||(5458577-5458639)
[»] chr1 (5 HSPs)
chr1 (227-356)||(16465686-16465822)
chr1 (22-118)||(16465554-16465650)
chr1 (22-87)||(50249155-50249220)
chr1 (260-310)||(50248297-50248347)
chr1 (115-172)||(50248348-50248405)
[»] chr4 (1 HSPs)
chr4 (99-199)||(6762518-6762618)
[»] chr5 (1 HSPs)
chr5 (251-356)||(1265276-1265388)
[»] chr6 (2 HSPs)
chr6 (311-356)||(9646155-9646200)
chr6 (311-356)||(9652172-9652217)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 38984522 - 38984671
Alignment:
Q  22 ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttcagcaggaaaaaga 121  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  38984522 ttccaaaaagggtatttcaaaaccaaaagttttagacccttagttgtc-agggaatgtcttcttttgctcctgtgtaaaagggcttcagcaggtaaaaga 38984620  T
Q  122 ataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactc 172  Q
    |||||||||||||||| ||||| ||||||| ||||| ||||||||||||||    
T  38984621 ataataggttgcaacatgctaatagtacaatcacaattggaattcaaactc 38984671  T

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Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 351
Target Start/End: Original strand, 10582949 - 10583292
Alignment:
Q  22 ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttcagcaggaaaaaga 121  Q
    |||||||| || |||||| || ||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||  |||| |    
T  10582949 ttccaaaatgggtatttccaaaccaaaagttttggaaccttagttgtctagggaatgtcttccttcgctcctgtgtaaaagggtttcagcag--aaaaaa 10583046  T
Q  122 ataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactcatttttaaaaggagtttcccaaagacatcgccaagtattttaagagtat 221  Q
    | |||||| |||| ||| ||||  ||||||||||||||||  |||||||||||| | |||||||| |||||| ||||||| ||||||| |||  |||  |    
T  10583047 agaataggctgcagcaatctaaaggtacaaacacaaatggcgttcaaactcattctaaaaaggaggttcccatagacatcaccaagtaatttgtgagctt 10583146  T
Q  222 gttca---------gttttctcattgcctttgggattgctctttgtttttgctagcttaggttatgtttggatagttggcctgctatggctacta----- 307  Q
    |||||         |||||||| |||| |||||||  |||||||||||||| |||||||| || ||||| ||||  ||||||| | ||||| |||         
T  10583147 gttcattgttcttggttttctctttgcatttgggaccgctctttgtttttggtagcttagtttctgttttgataactggcctgttgtggctgctatttgt 10583246  T
Q  308 --ctttttcttttgtttaatttctgcactctggctgtataagggtt 351  Q
      || ||||| |||| | |||||||||||||||||||| |||||||    
T  10583247 ctctctttctcttgtgtcatttctgcactctggctgtacaagggtt 10583292  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 356923 - 357020
Alignment:
Q  22 ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttcagcaggaaaaa 119  Q
    ||||||| ||| |||||| || ||||||||||| |||| |||||| || ||||||||||||| || ||||||||||||||||||||||| || |||||    
T  356923 ttccaaagagggtatttccaaaccaaaagttttggaacattagttatctagggaatgtcttccttcgctcctgtgtaaaagggtttcagaagaaaaaa 357020  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 5458639 - 5458577
Alignment:
Q  227 gttttctcattgcctttgggattgctctttgtttttgctagcttaggttatgtttggatagtt 289  Q
    ||||||||||||||| |||||||| |||||||||||||||| ||||||| | ||| |||||||    
T  5458639 gttttctcattgcctatgggattgttctttgtttttgctagtttaggttctattttgatagtt 5458577  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 227 - 356
Target Start/End: Original strand, 16465686 - 16465822
Alignment:
Q  227 gttttctcattgcctttgggattgctctttgtttttgctagcttaggttatgtttggatagttggcctgctatggctactactt-------tttcttttg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||| ||||| ||||||       |||||||||    
T  16465686 gttttctcattgcctttgggattgctctttgtttttgctagcttaggttctgttttgatagctggccagctgtggctgctacttgtctctctttcttttg 16465785  T
Q  320 tttaatttctgcactctggctgtataagggttcaagc 356  Q
    | |  ||||||||||||||||||||||||||||||||    
T  16465786 tgttttttctgcactctggctgtataagggttcaagc 16465822  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 16465554 - 16465650
Alignment:
Q  22 ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttcagcaggaaaa 118  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||| | ||  |||||| ||||||| || ||| ||||||||||||||||||||||    
T  16465554 ttccaaaaagggtatttcaaaaccaaaagttttagaaccttagttggctagtaaatgtcctcttttgttcttgtataaaagggtttcagcaggaaaa 16465650  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 50249220 - 50249155
Alignment:
Q  22 ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttctttt 87  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  50249220 ttccaaaaagggtatttcaaaaccaaaagttttagaaccttagttgtctagggaatgtcttctttt 50249155  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 50248347 - 50248297
Alignment:
Q  260 tttgctagcttaggttatgtttggatagttggcctgctatggctactactt 310  Q
    |||||||||||||||| ||||| ||||||| ||||| | ||||||||||||    
T  50248347 tttgctagcttaggttctgttttgatagtttgcctgttgtggctactactt 50248297  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 50248405 - 50248348
Alignment:
Q  115 aaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactc 172  Q
    ||||||||  ||||| |||||||| ||||| ||||||| |||||||||||| ||||||    
T  50248405 aaaaagaagtataggctgcaacaatctaacggtacaaatacaaatggaatttaaactc 50248348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 6762618 - 6762518
Alignment:
Q  99 aaagggtttcagcaggaaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactcatttttaaaaggagtttcccaaagac 198  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||| || | | |||||| || ||||||||    
T  6762618 aaagggtttcagcaggaaaaagaagaataggttgcaacaagctaacggtacaaacacaaatggaatttgaactcgttctcagaaggaggttaccaaagac 6762519  T
Q  199 a 199  Q
    |    
T  6762518 a 6762518  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 251 - 356
Target Start/End: Complemental strand, 1265388 - 1265276
Alignment:
Q  251 ctctttgtttttgctagcttaggttatgtttggatagttggcctgctatggctactactt-------tttcttttgtttaatttctgcactctggctgta 343  Q
    |||||||||||||||||||||||||   ||| ||||||||||||| | ||||||||||||       |||||||||| || ||| |||||||||||||||    
T  1265388 ctctttgtttttgctagcttaggttcaatttagatagttggcctgatgtggctactacttgtctctctttcttttgtgtagtttttgcactctggctgta 1265289  T
Q  344 taagggttcaagc 356  Q
    |||||||||||||    
T  1265288 taagggttcaagc 1265276  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 9646200 - 9646155
Alignment:
Q  311 tttcttttgtttaatttctgcactctggctgtataagggttcaagc 356  Q
    |||||||||| |||||| |||||| |||||||||||||||||||||    
T  9646200 tttcttttgtgtaatttttgcactttggctgtataagggttcaagc 9646155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 9652217 - 9652172
Alignment:
Q  311 tttcttttgtttaatttctgcactctggctgtataagggttcaagc 356  Q
    |||||||||| |||||| |||||| |||||||||||||||||||||    
T  9652217 tttcttttgtgtaatttttgcactttggctgtataagggttcaagc 9652172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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