View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20243_low_11 (Length: 295)
Name: NF20243_low_11
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20243_low_11 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 50650 - 50927
Alignment:
| Q |
18 |
agattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttaattaatgccaatccagcaaaaggtgcaaatac |
117 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50650 |
agattcacatggtttactctaaagtaatattaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatac |
50749 |
T |
|
| Q |
118 |
aaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaacaaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50750 |
aaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaacaaac |
50849 |
T |
|
| Q |
218 |
aattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattacttt |
295 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
50850 |
aattagatagccaaaatggtttcactaaagagatgtcgacataactaatattaccaaataatgctccttgattacttt |
50927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 44498918 - 44498641
Alignment:
| Q |
18 |
agattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttaattaatgccaatccagcaaaaggtgcaaatac |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44498918 |
agattcacatggtttactctaaagtaatattaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatac |
44498819 |
T |
|
| Q |
118 |
aaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaacaaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44498818 |
aaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaacaaac |
44498719 |
T |
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| Q |
218 |
aattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattacttt |
295 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
44498718 |
aattagatagccaaaatggtttcactaaagagatgtcgacataactaatattaccaaataatgctccttgattacttt |
44498641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 7291 - 7024
Alignment:
| Q |
15 |
cacagattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttaattaatgccaatccagcaaaaggtgcaaa |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7291 |
cacagattcacatggtttacactaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatactt-------------ccagcaaaaggtgcaaa |
7205 |
T |
|
| Q |
115 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7204 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
7105 |
T |
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| Q |
215 |
aacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattacttt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7104 |
aacaattagatagccaaaatggtttcactaaagagatgtcggcataactaatattaccaaataatgctccttgattacttt |
7024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 17204 - 16937
Alignment:
| Q |
15 |
cacagattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttaattaatgccaatccagcaaaaggtgcaaa |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17204 |
cacagattcacatggtttacactaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatactt-------------ccagcaaaaggtgcaaa |
17118 |
T |
|
| Q |
115 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17117 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
17018 |
T |
|
| Q |
215 |
aacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattacttt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17017 |
aacaattagatagccaaaatggtttcactaaagagatgtcggcataactaatattaccaaataatgctccttgattacttt |
16937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 21778 - 22045
Alignment:
| Q |
15 |
cacagattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttaattaatgccaatccagcaaaaggtgcaaa |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21778 |
cacagattcacatggtttacactaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatactt-------------ccagcaaaaggtgcaaa |
21864 |
T |
|
| Q |
115 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21865 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
21964 |
T |
|
| Q |
215 |
aacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattacttt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21965 |
aacaattagatagccaaaatggtttcactaaagagatgtcggcataactaatattaccaaataatgctccttgattacttt |
22045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 3381510 - 3381240
Alignment:
| Q |
15 |
cacagattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttaattaatgccaatccagcaaaaggtgcaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
3381510 |
cacagattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttagttaaagccaatccagcaaaaggtgcaaa |
3381411 |
T |
|
| Q |
115 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3381410 |
tacaaatttgtatctaaaatagttaacccagcccttacatatttcatacaaaatatgacaactccataaatggaaaattttaact----------caaca |
3381321 |
T |
|
| Q |
215 |
aacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattacttt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
3381320 |
aacaattagatagccaaaatggtttcactaaagacatgtcggcataactaatattaccaaacaatgctccttgattacttt |
3381240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 30111884 - 30112048
Alignment:
| Q |
86 |
attaatgccaatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaat |
185 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | ||||||| |
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|
| T |
30111884 |
attaaagccaatccagcaaaagttacaaatacaaatttgtatccaaaatagttaactcagcccttacattattcacacaaaatatgacaaat-cataaat |
30111982 |
T |
|
| Q |
186 |
ggaaaattttaactaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacat |
251 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
30111983 |
ggaaaatttcaactacgaaagggtgaacaaaacattagatagccaaaatgatttcactaaagacat |
30112048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 30110718 - 30110775
Alignment:
| Q |
20 |
attcacatggtttactctaaagt-aatatcaaatccaagattcaagcttaaaaacaaa |
76 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
30110718 |
attcacatggtttactctaaagtgaatatcaaatccaagatataagcttaaaaacaaa |
30110775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 9200091 - 9200166
Alignment:
| Q |
56 |
agattcaagcttaaaaacaaaacatacttaattaatgccaatccagcaaaaggtgcaaatacaaatttgtatccaaaa |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||| |||||||||||| |||||||| |
|
|
| T |
9200091 |
agattcaagcttaaaaacaaaacatacttaactaaagccaatcca-aaaaagttgc-aatacaaatttggatccaaaa |
9200166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 9201854 - 9201928
Alignment:
| Q |
56 |
agattcaagcttaaaaacaaaacatacttaattaatgccaatccagcaaaaggtgcaaatacaaatttgtatccaaaa |
133 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| ||||||||| |||| ||| |||||||||||| |||||||| |
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|
| T |
9201854 |
agattcaagcttaaaaacaaaacctacttaactaaagccaatcca--aaaaattgc-aatacaaatttggatccaaaa |
9201928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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