View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20243_low_12 (Length: 281)
Name: NF20243_low_12
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20243_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 37720961 - 37720768
Alignment:
| Q |
18 |
catagttgaagaaagagctaggtggcaagagagaaagatatttttcaagggttgtgtccagagttgtggagatgtaaaatagaccaaaattgattgaata |
117 |
Q |
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| T |
37720961 |
catagttgaagaaagagctaggtggcaagagagaaagatatttttcaagggttgtgtccagagttgtggagatgtaaaatagaccaaaattgattgaata |
37720862 |
T |
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| Q |
118 |
aaggatgggacatcgaatggaattcaaatgtgaaattcacatgtagacgtcacattcctcacaagctcgtcctagtcgcaatgaatttgttaga |
211 |
Q |
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| T |
37720861 |
aaggatgggacatcgaatggaattcaaatgtgaaattcacatgtagacgtcacattcctcacaagctcgtcctagtcacaatgaatttgttaga |
37720768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 37720753 - 37720703
Alignment:
| Q |
223 |
attctctataaaattgaagccatcatcacat-aaattctataaagtattat |
272 |
Q |
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| T |
37720753 |
attctctataaaattgaagtcatcatcacataaaattctatagagtattat |
37720703 |
T |
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