View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20243_low_15 (Length: 262)
Name: NF20243_low_15
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20243_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 7983656 - 7983882
Alignment:
| Q |
20 |
gaatggttggagattgagttagggagtttctacaccgaaaaagttcaagttcaagaggtgagaatgtgtctcaaggaagtcaatggtgtgcactttaaag |
119 |
Q |
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| T |
7983656 |
gaatggttggagattgagttagggagtttctacactgaaaaagttcaagttcaagaggtgagaatgtgtctcaaggaagtcaatggtgtggactttaaag |
7983755 |
T |
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| Q |
120 |
gtagattaattgttgatggaattgaactaagacccaaaacttataggttgtaacatttttatatgatattttggatggaaaaatgttagataatagtagt |
219 |
Q |
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| T |
7983756 |
gtagattaattgttgatggaattgaactaagacccaaaacttataggttgtaacatttttatatgatattttggatggaaaaatgttagataatagtatt |
7983855 |
T |
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| Q |
220 |
tatgttagtttttatggtcagaattat |
246 |
Q |
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| T |
7983856 |
tatgttagtttttatggtcagaattat |
7983882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 46296283 - 46296425
Alignment:
| Q |
20 |
gaatggttggagattgagttagggagtttctacaccgaaaaagttcaagttcaagaggtgagaatgtgtctcaaggaagtcaatggtgtgcactttaaag |
119 |
Q |
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||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||| |
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| T |
46296283 |
gaatggttggagattaaattagggagtttctacactgaaaaagttcaagttcaagaagtgagaatgtgtctcaaagaagtcaaaggtgtgcacttgaaag |
46296382 |
T |
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| Q |
120 |
gtagattaattgttgatggaattgaactaagacccaaaactta |
162 |
Q |
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| T |
46296383 |
gtgggctaattgttgatggaattgaactaaggcctaaaactta |
46296425 |
T |
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