View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20243_low_18 (Length: 244)
Name: NF20243_low_18
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20243_low_18 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 1347546 - 1347756
Alignment:
| Q |
1 |
aaaaaaccaagtatacatctaggaaatattcatatcaccgacaacttacaaacacgagagatcctaggacaggaagataaatcttctaaaaattgggagc |
100 |
Q |
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|||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1347546 |
aaaacaccaagtatatatctaggaaatattcatatcaccaacaacttacaaacacgagagatcctaggacaggaagataaatcttctaaaaaatgggagc |
1347645 |
T |
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| Q |
101 |
cctccgttgaagctgagtaactagtatgggaaatattcataacctgtaacagttttgcattcttcaatatataggttgcaaatcggaaatcagcttccac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347646 |
tctccgttgaagctgagtaactagtatgggaaatattcataacctgtaacagttttgcattcttcaatatataggttgcaaatcggaaatcagcttccac |
1347745 |
T |
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| Q |
201 |
agcttgatagt |
211 |
Q |
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||||||||||| |
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| T |
1347746 |
agcttgatagt |
1347756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 19969227 - 19969382
Alignment:
| Q |
56 |
gagagatcctaggacaggaagataaatcttctaaaaattgggagccctccgttgaagctgagtaactagtatgggaaatattcataacctgtaacagttt |
155 |
Q |
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||||||| || | |||||||||||| |||||||||||||||| | |||| || | |||| ||||||||||| || |||||||||| ||| || | |
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| T |
19969227 |
gagagatacttgaacaggaagataagtcttctaaaaattggggactctccaatggatttgagaaactagtatggaggattttcataacctttaaatgtct |
19969326 |
T |
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| Q |
156 |
tgcattcttcaatatataggttgcaaatcggaaatcagcttccacagcttgatagt |
211 |
Q |
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| T |
19969327 |
agcgttctgcaaaatatacgttgcaaatcgaaaatcagcttccacagcttgatagt |
19969382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 27358070 - 27358150
Alignment:
| Q |
137 |
tcataacctgtaacagttttgcattcttcaatatataggttgcaaatcggaaatcagcttccacagcttgatagttgataa |
217 |
Q |
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| T |
27358070 |
tcatatcctgtaaaagtcttgcattcttcaagatatatattgcaaatagaaaatcagcttctgcagcttgatagtttataa |
27358150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 13711905 - 13711964
Alignment:
| Q |
158 |
cattcttcaatatataggttgcaaatcggaaatcagcttccacagcttgatagttgataa |
217 |
Q |
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| T |
13711905 |
cattctgcaaaatatatgctgcaaatcggaaatcagcttccacaacttcatagtttataa |
13711964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 40936 - 40864
Alignment:
| Q |
137 |
tcataacctgtaacagttttgcattcttcaatatataggttgcaaatcggaaatcagcttccacagcttgata |
209 |
Q |
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| T |
40936 |
tcatatcctttaaaagtcttgcgttcttcaatatatacgatgcaaatttaaaatcagcttccacagtttgata |
40864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 32241587 - 32241623
Alignment:
| Q |
56 |
gagagatcctaggacaggaagataaatcttctaaaaa |
92 |
Q |
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| T |
32241587 |
gagagatccttggacaggaggataaatcttctaaaaa |
32241623 |
T |
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