View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20243_low_20 (Length: 236)
Name: NF20243_low_20
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20243_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 30006888 - 30007105
Alignment:
| Q |
4 |
ttttgttaagttcagtgaaaatattcatgtagtagctgatatcaattataattttaattttttgttagggattaacacgagcttgcnnnnnnnccagtaa |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30006888 |
ttttgttaagttcagtgaaaatattcatgtagtagctgatatcaattataagtttaattttttgttagggattaacacgagcttgcaaaaaaaccagtaa |
30006987 |
T |
|
| Q |
104 |
agccctcgatgaggttttggagatgataataacagagcacgaacagactactaatacagacaaaactcgtaatgaagattttgtagacatacttctttca |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30006988 |
agccctcgatgaggttttggagatgataataacagagcacgaacagactactaatactgacaaaactcgtaatgaagactttgtagacatacttctttca |
30007087 |
T |
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| Q |
204 |
attatgcaccaaaccatt |
221 |
Q |
| |
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|||||||||||||||||| |
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| T |
30007088 |
attatgcaccaaaccatt |
30007105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 30000784 - 30000989
Alignment:
| Q |
5 |
tttgttaagttcagtgaaaatattcatgtagtagctgatatcaattataattttaattttttgttagggattaacacgagcttgcnnnnnnnccagtaaa |
104 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||| | ||| |||| |||||| ||||||||||||| ||||||| |||||||| |
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| T |
30000784 |
tttgttaagttcaatgaaaatattcatgtagtaactgatatta-ttag----ttaactttttgatagggattaacacaagcttgcaaaaaaaccagtaaa |
30000878 |
T |
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| Q |
105 |
gccctcgatgaggttttggagatgataataacagagcacgaacagactactaatacagacaaaactcgtaatgaagattttgtagacatacttctttcaa |
204 |
Q |
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|| || ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| | || || ||||||||||||||| | ||||||||| |
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| T |
30000879 |
gctcttgatgaagttttggagatgataataacagagcatgaacaaactactaatacagacga---tccta---aagattttgtagacacagttctttcaa |
30000972 |
T |
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| Q |
205 |
ttatgcaccaaaccatt |
221 |
Q |
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||||||||||||||||| |
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| T |
30000973 |
ttatgcaccaaaccatt |
30000989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 29944467 - 29944602
Alignment:
| Q |
64 |
tttgttagggattaacacgagcttgcnnnnnnnccagtaaagccctcgatgaggttttggagatgataataacagagcacgaacagactactaatacaga |
163 |
Q |
| |
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|||||||||| ||||||||||| ||| ||| ||||| || |||||||| ||||||||||||||| ||||||| ||||| || ||||||||||| |
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| T |
29944467 |
tttgttagggcttaacacgagcctgcaaaagaaccaacaaagcacttgatgaggtgttggagatgataatatcagagcatgaacaaaccactaatacaga |
29944566 |
T |
|
| Q |
164 |
caaaactcgtaatgaagattttgtagacatacttct |
199 |
Q |
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|||||||||| ||||||| ||||||||||||||||| |
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| T |
29944567 |
caaaactcgtcatgaagactttgtagacatacttct |
29944602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 29995258 - 29995316
Alignment:
| Q |
163 |
acaaaactcgtaatgaagattttgtagacatacttctttcaattatgcaccaaaccatt |
221 |
Q |
| |
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||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29995258 |
acaaaactcatcataaagattttgtagacatacttctttcaattatgcaccaaaccatt |
29995316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 29946441 - 29946595
Alignment:
| Q |
66 |
tgttagggattaacacgagcttgcnnnnnnnccagtaaagccctcgatgaggttttggagatgataataacagagcacgaacagactactaatacagaca |
165 |
Q |
| |
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|||||||||||||||||||| ||| | |||||| | || |||||||| |||| |||||||||||||||| ||||| || |||||| ||||| |
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| T |
29946441 |
tgttagggattaacacgagcctgcaagaaaacaagtaaatcacttgatgaggtgctggaagtgataataacagagcatgaacaaacaactaatgtagaca |
29946540 |
T |
|
| Q |
166 |
aaactcgtaatgaagattttgtagacatacttctttcaattatgcaccaaaccat |
220 |
Q |
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|||||| | ||||||| || ||||||||||| || ||||||| | |||||||||| |
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| T |
29946541 |
aaactcatcatgaagacttcgtagacatactactctcaattaagaaccaaaccat |
29946595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 30043936 - 30043893
Alignment:
| Q |
178 |
aagattttgtagacatacttctttcaattatgcaccaaaccatt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30043936 |
aagattttgtagacatacttctttcaattatgcaccaaaccatt |
30043893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 217
Target Start/End: Original strand, 29964704 - 29964821
Alignment:
| Q |
100 |
gtaaagccctcgatgaggttttggagatgataataacagagcacgaacagactactaatacagacaaaactcgtaatgaagattttgtagacatacttct |
199 |
Q |
| |
|
||||||| || |||||||| |||||||||||||| |||||||| ||||| | |||||| ||||||| |||| |||||||||| | || |||||||| |
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| T |
29964704 |
gtaaagcacttgatgaggtattggagatgataattacagagcatgaacaaagcactaatgtagacaaagttcgtcatgaagatttcattgatatacttct |
29964803 |
T |
|
| Q |
200 |
ttcaattatgcaccaaac |
217 |
Q |
| |
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|||||| |||||||||| |
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| T |
29964804 |
ctcaattgtgcaccaaac |
29964821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 30010094 - 30009977
Alignment:
| Q |
100 |
gtaaagccctcgatgaggttttggagatgataataacagagcacgaacagactactaatacagacaaaactcgtaatgaagattttgtagacatacttct |
199 |
Q |
| |
|
||||||| || |||||||| |||||||||||||| |||||||| ||||| | |||||| ||||||| |||| |||||||||| | || |||||||| |
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| T |
30010094 |
gtaaagcacttgatgaggtattggagatgataattacagagcatgaacaaagcactaatgtagacaaagttcgtcatgaagatttcattgatatacttct |
30009995 |
T |
|
| Q |
200 |
ttcaattatgcaccaaac |
217 |
Q |
| |
|
|||||| |||||||||| |
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|
| T |
30009994 |
ctcaattgtgcaccaaac |
30009977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 29953469 - 29953557
Alignment:
| Q |
133 |
taacagagcacgaacagactactaatacagacaaaactcgtaatgaagattttgtagacatacttctttcaattatgcaccaaaccatt |
221 |
Q |
| |
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|||||||||| ||||| || |||||| |||||||| ||| ||||||| ||||| |||||||||||| || ||||||||||||||||| |
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| T |
29953469 |
taacagagcatgaacaaaccactaatgtagacaaaaatcgccatgaagactttgttgacatacttcttacatttatgcaccaaaccatt |
29953557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 30068469 - 30068411
Alignment:
| Q |
163 |
acaaaactcgtaatgaagattttgtagacatacttctttcaattatgcaccaaaccatt |
221 |
Q |
| |
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||||||||| | || ||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
30068469 |
acaaaactcatcataaagatttcgtagacatacttctttcaattatgcatcaaaccatt |
30068411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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