View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20243_low_23 (Length: 219)
Name: NF20243_low_23
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20243_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 24755614 - 24755786
Alignment:
| Q |
18 |
gattatcatttctgaaggtttaatcttattacttgcctaattgttgtttcctagcnnnnnnnnnnncctgtccagttgtttcgagttgttttttgtaatg |
117 |
Q |
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| T |
24755614 |
gattatcatttctagaggtttaatcttattacttgcctaattcttgtttcctagctttttctctttc-tgtccagttgtttcgagtt---tcttgtaatg |
24755709 |
T |
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| Q |
118 |
taactttgtacttttgataagtcgttatggtacatcttgtgttgggggacttattcttgtttaatatatgtgtgtgt |
194 |
Q |
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| T |
24755710 |
taactttgtactttagataagtcgttatggtacatcttatgttgggggacttattcttgtttaatatatgtgtgtgt |
24755786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 24836442 - 24836494
Alignment:
| Q |
18 |
gattatcatttctgaaggtttaatcttattacttgcctaattgttgtttccta |
70 |
Q |
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| T |
24836442 |
gattatcatttatggaggcttaatcttattacttgcttaattgttgtttccta |
24836494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 24841334 - 24841386
Alignment:
| Q |
18 |
gattatcatttctgaaggtttaatcttattacttgcctaattgttgtttccta |
70 |
Q |
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| T |
24841334 |
gattatcatttatggaggcttaatcttattacttgcttaattgttgtttccta |
24841386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 24836524 - 24836578
Alignment:
| Q |
105 |
gttttttgtaatgtaactttgtacttttgataagtcgttatggtacatcttgtgt |
159 |
Q |
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| T |
24836524 |
gtttcttgtaatgtaactttgtacttttgataagtcaatctcgtacatcttgtgt |
24836578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 24841416 - 24841470
Alignment:
| Q |
105 |
gttttttgtaatgtaactttgtacttttgataagtcgttatggtacatcttgtgt |
159 |
Q |
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| T |
24841416 |
gtttcttgtaatgtaaatttgtacttttgataagtcaatctagtacatcttgtgt |
24841470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 41200297 - 41200261
Alignment:
| Q |
107 |
tttttgtaatgtaactttgtacttttgataagtcgtt |
143 |
Q |
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| T |
41200297 |
tttttgcaatgtaactttgtacttttaataagtcgtt |
41200261 |
T |
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