View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20243_low_7 (Length: 358)

Name: NF20243_low_7
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20243_low_7
NF20243_low_7
[»] chr1 (7 HSPs)
chr1 (184-339)||(50860314-50860470)
chr1 (75-135)||(50860467-50860527)
chr1 (1-42)||(26854205-26854246)
chr1 (1-42)||(52271130-52271171)
chr1 (4-42)||(11769879-11769917)
chr1 (4-42)||(25494374-25494412)
chr1 (1-42)||(25665655-25665696)
[»] scaffold0190 (1 HSPs)
scaffold0190 (3-42)||(11583-11622)
[»] chr8 (2 HSPs)
chr8 (1-52)||(13583395-13583446)
chr8 (2-42)||(28901235-28901275)
[»] chr4 (5 HSPs)
chr4 (3-42)||(31859786-31859825)
chr4 (1-42)||(13064614-13064655)
chr4 (1-41)||(17187361-17187401)
chr4 (4-44)||(19601989-19602029)
chr4 (125-169)||(32650737-32650781)
[»] scaffold0011 (1 HSPs)
scaffold0011 (4-42)||(228072-228110)
[»] chr3 (4 HSPs)
chr3 (2-42)||(18474359-18474399)
chr3 (2-42)||(19543009-19543049)
chr3 (5-52)||(11475039-11475086)
chr3 (3-42)||(19219096-19219135)
[»] chr6 (3 HSPs)
chr6 (3-42)||(33638276-33638315)
chr6 (3-42)||(33638390-33638429)
chr6 (3-41)||(26499733-26499771)
[»] chr5 (3 HSPs)
chr5 (3-42)||(7742755-7742794)
chr5 (1-42)||(23157689-23157730)
chr5 (5-57)||(20694832-20694884)
[»] chr2 (3 HSPs)
chr2 (3-42)||(22525705-22525744)
chr2 (1-42)||(14921924-14921965)
chr2 (5-42)||(18818894-18818931)
[»] scaffold1149 (1 HSPs)
scaffold1149 (4-41)||(1978-2015)
[»] chr7 (2 HSPs)
chr7 (1-42)||(30405782-30405823)
chr7 (3-39)||(8308924-8308960)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 184 - 339
Target Start/End: Complemental strand, 50860470 - 50860314
Alignment:
Q  184 tgaacccaacagttaacacatcgatcgtaggaagaagaagttgcaatggcttctttctctttcggtggagatgctggtcgcagtgagaga--gagaaggg 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||  ||||||||    
T  50860470 tgaacccaacagttaacacatcgatcgtaggaagaagaagttgcaatggcttctttctgtttcgctggagatgttggtcgcagtgagagagagagaaggg 50860371  T
Q  282 gagaggnnnnnnnnnnggtgtcaaatgttttggtctttgtattgagcggtgtgtactt 339  Q
    ||||||           ||||||||||||||||||| |||||||||||||||||||||    
T  50860370 gagaggaaaaaaaaaa-gtgtcaaatgttttggtctctgtattgagcggtgtgtactt 50860314  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 50860527 - 50860467
Alignment:
Q  75 aaaaagaaatttgagtgataccatgtagcgtgcgttcttgatgatattggaaatcaatgaa 135  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50860527 aaaatgaaatttgagtgataccatgtagcgtgcgttcttgatgatattggaaatcaatgaa 50860467  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26854246 - 26854205
Alignment:
Q  1 gttcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  26854246 gttcaatggttcttagaagatatttgaagacaatacaaagtg 26854205  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52271171 - 52271130
Alignment:
Q  1 gttcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  52271171 gttcaatggtacttagaaggtatttgaagacaatacaaagtg 52271130  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 11769917 - 11769879
Alignment:
Q  4 caatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  11769917 caatggttcttagaaggtttttgaagacaatacaaagtg 11769879  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 25494412 - 25494374
Alignment:
Q  4 caatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  25494412 caatggttcttagaaggtttttgaagacaatacaaagtg 25494374  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25665696 - 25665655
Alignment:
Q  1 gttcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||||||||||||  ||||| ||||||||||||||||    
T  25665696 gttcaatggttcttataaaatatttaaagacaatacaaagtg 25665655  T

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Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 11622 - 11583
Alignment:
Q  3 tcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  11622 tcaatgattcttataaggtatttgaagacaatacaaagtg 11583  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13583446 - 13583395
Alignment:
Q  1 gttcaatggttcttataaggtatttgaagacaatacaaagtggaaaagaaaa 52  Q
    ||||||||||||||| ||| |||||||||||||||||||||| |||| ||||    
T  13583446 gttcaatggttcttagaagatatttgaagacaatacaaagtgaaaaaaaaaa 13583395  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 28901275 - 28901235
Alignment:
Q  2 ttcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  28901275 ttcaatggttcttataaggtttctgaagacaatacaaagtg 28901235  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 31859825 - 31859786
Alignment:
Q  3 tcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  31859825 tcaatggttcttagaaggtatttgaagacaatacaaagtg 31859786  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13064614 - 13064655
Alignment:
Q  1 gttcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||||||||| | |||||||||||||||| |||||||    
T  13064614 gttcaatggttcttagagggtatttgaagacaattcaaagtg 13064655  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17187361 - 17187401
Alignment:
Q  1 gttcaatggttcttataaggtatttgaagacaatacaaagt 41  Q
    ||||| ||||||||| ||| |||||||||||||||||||||    
T  17187361 gttcagtggttcttagaagttatttgaagacaatacaaagt 17187401  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 19601989 - 19602029
Alignment:
Q  4 caatggttcttataaggtatttgaagacaatacaaagtgga 44  Q
    |||||||||||| ||||| ||||||||||||| ||||||||    
T  19601989 caatggttcttaaaaggtttttgaagacaataaaaagtgga 19602029  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 32650737 - 32650781
Alignment:
Q  125 aaatcaatgaaaggaaagagtagatgaattgagatgatgagatcg 169  Q
    |||| ||||||||||||||||| | ||||||||||| ||||||||    
T  32650737 aaataaatgaaaggaaagagtaaacgaattgagatgctgagatcg 32650781  T

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Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 228110 - 228072
Alignment:
Q  4 caatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  228110 caatggttcttagaaggtatttgaagacaatacaaagtg 228072  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 18474359 - 18474399
Alignment:
Q  2 ttcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  18474359 ttcaatggtacttagaaggtatttgaagacaatacaaagtg 18474399  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 19543049 - 19543009
Alignment:
Q  2 ttcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  19543049 ttcaatagttcttagaaggtatttgaagacaatacaaagtg 19543009  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 11475039 - 11475086
Alignment:
Q  5 aatggttcttataaggtatttgaagacaatacaaagtggaaaagaaaa 52  Q
    ||||||||||| ||| |||||||||||||||||||||| |||| ||||    
T  11475039 aatggttcttagaagatatttgaagacaatacaaagtgaaaaaaaaaa 11475086  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 19219135 - 19219096
Alignment:
Q  3 tcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  19219135 tcaatggttcttagaaggtttttgaagacaatacaaagtg 19219096  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 33638276 - 33638315
Alignment:
Q  3 tcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  33638276 tcaatggttcttataaggtctttgaagataatacaaagtg 33638315  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 33638429 - 33638390
Alignment:
Q  3 tcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  33638429 tcaatggttcttataaggtctttgaagataatacaaagtg 33638390  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 26499771 - 26499733
Alignment:
Q  3 tcaatggttcttataaggtatttgaagacaatacaaagt 41  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  26499771 tcaatggttcttagaaggtttttgaagacaatacaaagt 26499733  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 7742794 - 7742755
Alignment:
Q  3 tcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  7742794 tcaatggttcttagaaggtctttgaagacaatacaaagtg 7742755  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23157730 - 23157689
Alignment:
Q  1 gttcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||||||||||||||||||| ||||||| | ||||||    
T  23157730 gttcaatggttcttataaggtatttaaagacaacagaaagtg 23157689  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 20694832 - 20694884
Alignment:
Q  5 aatggttcttataaggtatttgaagacaatacaaagtggaaaagaaaatcatt 57  Q
    ||||||||||| |||||||||||||||||||| |||   |||| |||||||||    
T  20694832 aatggttcttagaaggtatttgaagacaataccaagcaaaaaaaaaaatcatt 20694884  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 22525744 - 22525705
Alignment:
Q  3 tcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  22525744 tcaatggttcttagaaggtatttgaagacaacacaaagtg 22525705  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14921965 - 14921924
Alignment:
Q  1 gttcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||||||||| ||||||| || |||||||||||||||    
T  14921965 gttcaatggttcttagaaggtatatgtagacaatacaaagtg 14921924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 18818894 - 18818931
Alignment:
Q  5 aatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  18818894 aatggttcttagaaggtctttgaagacaatacaaagtg 18818931  T

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Target: scaffold1149 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 1978 - 2015
Alignment:
Q  4 caatggttcttataaggtatttgaagacaatacaaagt 41  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  1978 caatggttcttatatggtttttgaagacaatacaaagt 2015  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30405782 - 30405823
Alignment:
Q  1 gttcaatggttcttataaggtatttgaagacaatacaaagtg 42  Q
    |||||||| |||||| |||||||||||| |||||||||||||    
T  30405782 gttcaatgattcttagaaggtatttgaatacaatacaaagtg 30405823  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 8308960 - 8308924
Alignment:
Q  3 tcaatggttcttataaggtatttgaagacaatacaaa 39  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  8308960 tcaatggttcttagaaggtctttgaagacaatacaaa 8308924  T

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