View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20243_low_8 (Length: 347)
Name: NF20243_low_8
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20243_low_8 |
 | |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 38 - 331
Target Start/End: Original strand, 50995 - 51288
Alignment:
| Q |
38 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50995 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
51094 |
T |
|
| Q |
138 |
tatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttcttcgccccctaattgggttgaatacannnnnnnccatc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51095 |
tatgcacaatccttctttgcttggttcccacagtcttgacattttagactctttaacacttcttcgccccctaattgggttgaatacatttttttccatc |
51194 |
T |
|
| Q |
238 |
tctttagctttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51195 |
tctttagctttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
51288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 38 - 331
Target Start/End: Complemental strand, 6956 - 6665
Alignment:
| Q |
38 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6956 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttttgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
6857 |
T |
|
| Q |
138 |
tatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttcttcgccccctaattgggttgaatacannnnnnnccatc |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
6856 |
tatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct---ccccctaattgggttgaatacatttttttccatc |
6760 |
T |
|
| Q |
238 |
tctttagc-tttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
331 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6759 |
tctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
6665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 38 - 331
Target Start/End: Complemental strand, 16869 - 16578
Alignment:
| Q |
38 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16869 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttttgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
16770 |
T |
|
| Q |
138 |
tatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttcttcgccccctaattgggttgaatacannnnnnnccatc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
16769 |
tatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct---ccccctaattgggttgaatacatttttttccatc |
16673 |
T |
|
| Q |
238 |
tctttagc-tttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
331 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16672 |
tctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
16578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 38 - 331
Target Start/End: Original strand, 22113 - 22404
Alignment:
| Q |
38 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22113 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttttgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
22212 |
T |
|
| Q |
138 |
tatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttcttcgccccctaattgggttgaatacannnnnnnccatc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
22213 |
tatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct---ccccctaattgggttgaatacatttttttccatc |
22309 |
T |
|
| Q |
238 |
tctttagc-tttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
331 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22310 |
tctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
22404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 38 - 331
Target Start/End: Complemental strand, 15709112 - 15708821
Alignment:
| Q |
38 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15709112 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttttgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
15709013 |
T |
|
| Q |
138 |
tatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttcttcgccccctaattgggttgaatacannnnnnnccatc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
15709012 |
tatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct---ccccctaattgggttgaatacatttttttccatc |
15708916 |
T |
|
| Q |
238 |
tctttagc-tttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
331 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15708915 |
tctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
15708821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 79 - 331
Target Start/End: Original strand, 26795723 - 26795979
Alignment:
| Q |
79 |
ttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgaca |
178 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26795723 |
ttctgatatgtgtatggcagttaaaacctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgaca |
26795822 |
T |
|
| Q |
179 |
ttttagaccctttaacacttcttcgccccctaattgggttgaatacannnnnnnccatctctttagc-tttaaactaaagatcatccttttatgagttt- |
276 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||| ||||||| || ||||| ||||||| ||| |||||||||||||| |||||| ||||| |
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|
| T |
26795823 |
ttttggaccctttaacacttcttcttcccctaattgtgttgaatgca-tcttttccatccctttagctttttaactaaagatcatctttttattagttta |
26795921 |
T |
|
| Q |
277 |
---ccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
331 |
Q |
| |
|
||||||||| |||| |||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
26795922 |
caaccttttggttgtagagtggtaccatactatatactctatgtgatgggcataaaag |
26795979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 38 - 331
Target Start/End: Complemental strand, 3381175 - 3380885
Alignment:
| Q |
38 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381175 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtttggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
3381076 |
T |
|
| Q |
138 |
tatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttcttcgccccctaattgggttgaatacannnnnnnccatc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
3381075 |
tatgcacaatccttctttgcttggttcccacagtcttgacattttagtccctttaacacttct----cccctaattgggttgaatacatttttttccatc |
3380980 |
T |
|
| Q |
238 |
tctttagc-tttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
331 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3380979 |
tctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatgggcataaaag |
3380885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 38 - 297
Target Start/End: Complemental strand, 44498573 - 44498316
Alignment:
| Q |
38 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498573 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
44498474 |
T |
|
| Q |
138 |
tatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttcttcgccccctaattgggttgaatacannnnnnnccatc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
44498473 |
tatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct---ccccctagttgggttgaatacatttttttccatc |
44498377 |
T |
|
| Q |
238 |
tctttagc-tttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggta |
297 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498376 |
tctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggta |
44498316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 44498189 - 44498153
Alignment:
| Q |
295 |
gtattatactatatcctctatgtgatgggcataaaag |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498189 |
gtattatactatatcctctatgtgatgggcataaaag |
44498153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 30112132 - 30112170
Alignment:
| Q |
38 |
ccactaattttctatcagcaggaatccaagtgcttctga |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30112132 |
ccactaattttctatcagcaggaatccaagtgcttctga |
30112170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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