View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20243_low_9 (Length: 342)

Name: NF20243_low_9
Description: NF20243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20243_low_9
NF20243_low_9
[»] chr6 (10 HSPs)
chr6 (134-333)||(31055709-31055912)
chr6 (7-110)||(31056786-31056891)
chr6 (17-107)||(31080662-31080752)
chr6 (24-110)||(31045963-31046049)
chr6 (53-110)||(31027122-31027179)
chr6 (23-110)||(31096265-31096352)
chr6 (53-110)||(31035533-31035590)
chr6 (33-102)||(31059173-31059242)
chr6 (53-110)||(31110547-31110604)
chr6 (19-110)||(31070017-31070109)
[»] scaffold0018 (1 HSPs)
scaffold0018 (19-110)||(170676-170767)
[»] scaffold0202 (1 HSPs)
scaffold0202 (36-83)||(4968-5015)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 9e-92; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 134 - 333
Target Start/End: Complemental strand, 31055912 - 31055709
Alignment:
Q  134 tgcttgatcacatttagtgaagtataaatgatcatgggttcaacaatattttgtcgtccaactactgaatcatgatatgttggatgacaatcaataagct 233  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31055912 tgcttgatcacatttagtggagtataaatgatcatgggttcaacaatattttgtcgtccaactactgaatcatgatatgttggatgacaatcaataagct 31055813  T
Q  234 tttgaaaaatcatgagtgatgtgagaaatgatcg----tatacagtaggttaagttgtcctcaactttgatggatcattagtgtcggtcaattatactcg 329  Q
    ||||||||||||||||||||| ||||||||||||    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31055812 tttgaaaaatcatgagtgatgcgagaaatgatcgtatatatacagtaagttaagttgtcctcaactctgatggatcattagtgtcggtcaattatactcg 31055713  T
Q  330 ataa 333  Q
    ||||    
T  31055712 ataa 31055709  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 31056891 - 31056786
Alignment:
Q  7 ggacatcatcaatatgagattgggtg--ccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacacata 104  Q
    ||||| || |||||||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  31056891 ggacagcagcaatatgagattgggtgtgccaaactatgagttaatatttgatatacaatcttattttatatgtaaaccttcctgcctgttttaacacata 31056792  T
Q  105 ctcgat 110  Q
    ||||||    
T  31056791 ctcgat 31056786  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 31080752 - 31080662
Alignment:
Q  17 aatatgagattgggtgccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactc 107  Q
    |||||||||||| ||  | ||||||||||| |||| | ||||||| |||||||||||| |||||||||| ||| |||||||||||||||||    
T  31080752 aatatgagattgagtctccaactatgagttgataagttatatacactcttattttataggtaaaccttcgtgcatgttttaacacatactc 31080662  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 31046049 - 31045963
Alignment:
Q  24 gattgggtgccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat 110  Q
    |||||||| || ||||||||| ||||   ||||||||| |||||||||||| | ||| |||| ||| ||||||||||||||||||||    
T  31046049 gattgggtccccaactatgagataatgggtgatatacactcttattttatagggaaatcttcatgcctgttttaacacatactcgat 31045963  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 31027179 - 31027122
Alignment:
Q  53 tgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat 110  Q
    ||||||||| |||||||||||| ||||||||   ||| ||||||||||||||||||||    
T  31027179 tgatatacactcttattttataggtaaacctctgtgcctgttttaacacatactcgat 31027122  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 31096265 - 31096352
Alignment:
Q  23 agattgggtgccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat 110  Q
    ||||||||| || ||||||| |||||||| |||| |||| |||||||||||| ||||| |||  ||| | |||||||  |||||||||    
T  31096265 agattgggtccccaactatgtgttaataagtgatgtacactcttattttataagtaaaacttagtgcctattttaacgtatactcgat 31096352  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 31035590 - 31035533
Alignment:
Q  53 tgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat 110  Q
    ||||||||| |||| ||||||| | |||||||| ||  ||||||||||||||||||||    
T  31035590 tgatatacactcttcttttataggaaaaccttcatgactgttttaacacatactcgat 31035533  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 31059242 - 31059173
Alignment:
Q  33 ccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacaca 102  Q
    ||||||||||||| | ||| ||||||||| |||||||||||| ||||| |||  ||| |||||| |||||    
T  31059242 ccaaactatgagtaagtaaatgatatacactcttattttataggtaaatctttgtgcctgtttttacaca 31059173  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 31110604 - 31110547
Alignment:
Q  53 tgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat 110  Q
    |||||||||  ||||||||||| |||||| ||| | | ||||||||||||||||||||    
T  31110604 tgatatacacccttattttataggtaaacattcatacatgttttaacacatactcgat 31110547  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 31070109 - 31070017
Alignment:
Q  19 tatgagattgg-gtgccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat 110  Q
    ||||||||||| || || |||||||| |||||   ||||||||| |||||||||||| ||||| ||| |||  |||||| |||||| ||||||    
T  31070109 tatgagattggagtccccaactatgacttaattggtgatatacactcttattttataggtaaatctttctgactgttttgacacatcctcgat 31070017  T

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Target: scaffold0018 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 170676 - 170767
Alignment:
Q  19 tatgagattgggtgccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat 110  Q
    ||||||||||||| || ||||||| |||||||| ||||| ||| |||||||||||| |||||||||| |   |||||||||| |||||||||    
T  170676 tatgagattgggtccccaactatgggttaataagtgatacacactcttattttataggtaaaccttcttctatgttttaacatatactcgat 170767  T

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Target: scaffold0202 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 4968 - 5015
Alignment:
Q  36 aactatgagttaataattgatatacattcttattttatatgtaaacct 83  Q
    |||||||||||||||| ||||||||| ||||||||||||  |||||||    
T  4968 aactatgagttaataagtgatatacactcttattttatagataaacct 5015  T

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