View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20244_high_10 (Length: 323)

Name: NF20244_high_10
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20244_high_10
NF20244_high_10
[»] chr4 (1 HSPs)
chr4 (13-323)||(47601279-47601589)
[»] chr5 (11 HSPs)
chr5 (13-323)||(13388980-13389290)
chr5 (15-323)||(13385159-13385467)
chr5 (17-301)||(13419461-13419745)
chr5 (13-171)||(13393539-13393697)
chr5 (16-319)||(13413115-13413418)
chr5 (18-301)||(13426353-13426636)
chr5 (17-161)||(13447012-13447156)
chr5 (17-323)||(13453965-13454271)
chr5 (27-158)||(13379009-13379140)
chr5 (258-320)||(13393390-13393452)
chr5 (264-304)||(13447259-13447299)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 47601279 - 47601589
Alignment:
Q  13 aatatcgaagaggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47601279 aatatcgaagaggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtc 47601378  T
Q  113 tacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47601379 tacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcaagattt 47601478  T
Q  213 tcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtca 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47601479 tcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttgtctccaactttgaacttttctactttgcttcccacttttgtca 47601578  T
Q  313 ctataccaaca 323  Q
    |||||||||||    
T  47601579 ctataccaaca 47601589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 13389290 - 13388980
Alignment:
Q  13 aatatcgaagaggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtc 112  Q
    |||||| ||||||||| ||||| ||||| || |||||||| ||||| |||| |||||||||||| || ||||| |||||||||||||| |||| ||| ||    
T  13389290 aatatctaagaggactgtacacagtgatcccagcacaaaggagaggtgcagcagcttcaagtggtaatccatcaggaatgtgaaccacgaagttctcatc 13389191  T
Q  113 tacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattt 212  Q
    | |||||| ||||||||| |||||||| |||||| | || ||||| ||||| |||||||||||||||   |||||    ||||| ||| |||| |||||     
T  13389190 tgcaaccaatgagtcagaataacctccatatgtgctcgttccatcgcgatacttggcaccacatgtgaaagtaaatgtgggacagtaattttcaagattg 13389091  T
Q  213 tcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtca 312  Q
    ||| ||||||||||||| ||||  |||||||| | |||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||    
T  13389090 tcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcccacctttgtca 13388991  T
Q  313 ctataccaaca 323  Q
    |||||||||||    
T  13388990 ctataccaaca 13388980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 13385467 - 13385159
Alignment:
Q  15 tatcgaagaggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtcta 114  Q
    |||| ||||||||| ||||| ||||| || |||||||| ||||| |||| |||||||||||| || ||||| |||||||||||||| |||| |||  | |    
T  13385467 tatctaagaggactgtacacagtgatcccagcacaaaggagaggtgcagcagcttcaagtggtaatccatcaggaatgtgaaccacgaagttctcagcca 13385368  T
Q  115 caaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaa-gcgaggacaataactttcgagatttt 213  Q
    |||||| ||||||||| |||||||||| |||| |||| ||||||||||   || |||||  ||| |  ||  | ||| || || ||| |||| ||||| |    
T  13385367 caaccaatgagtcagaataacctccgtgtgtgatggttccatcacgatgcatgccaccaactgtagtagtgtatgcgggg-cagtaattttcaagattgt 13385269  T
Q  214 cagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcac 313  Q
    || ||||||||||||||||||  |||||||| || ||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||    
T  13385268 caacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcccacctttgtcac 13385169  T
Q  314 tataccaaca 323  Q
    ||||||||||    
T  13385168 tataccaaca 13385159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 13419461 - 13419745
Alignment:
Q  17 tcgaagaggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctaca 116  Q
    |||||||||||||||||||||||| || || |||||||||||| | | ||| ||||| || || | ||| |||||| ||| |||||||||||||||| ||    
T  13419461 tcgaagaggactatacactgtgattccagcgcaaagaagaggaccggcagcatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgca 13419560  T
Q  117 accattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttcag 216  Q
    ||||||||||| ||||||||||| ||||||  ||||||||||||||| || |||||||||||| |||||||    || || ||| | || ||||  ||||    
T  13419561 accattgagtcggagtaacctccatatgtgacggtgccatcacgatactttgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcag 13419660  T
Q  217 cacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcc 301  Q
    |||||||||| || || |  |||||||| | |||| | || ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  13419661 cacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtctccaactttaaacttttctactttgcttcc 13419745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 13393697 - 13393539
Alignment:
Q  13 aatatcgaagaggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtc 112  Q
    |||||||||||||||||||||| || |||||||||||||| |||||||||| || ||||||||| || ||||| ||||||||||| | ||||||||| ||    
T  13393697 aatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaatgtgaactataaagtgctcatc 13393598  T
Q  113 tacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcac 171  Q
    | ||||||||||||||||||| ||||| |||||| || | |||||||  ||||||||||    
T  13393597 tgcaaccattgagtcagagtaccctccatatgtgatgcttccatcactgtatttggcac 13393539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 13413115 - 13413418
Alignment:
Q  16 atcgaagaggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctac 115  Q
    |||||||||||||||| || |||| ||| |||||||| |||||| ||| |  |||||| || |     || |||||| ||| |||||||||||||||| |    
T  13413115 atcgaagaggactatatacggtgacaccagcacaaaggagaggaccagcaaattcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgc 13413214  T
Q  116 aaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttca 215  Q
    |||||||||||| ||||||||||| || |||  ||| ||||||||||| ||||||||||||||| ||  |||    || || ||| | || ||||| |||    
T  13413215 aaccattgagtcggagtaacctccataagtgacggttccatcacgatacttggcaccacatgtgactacaaatttggggcagtaattctcaagattgtca 13413314  T
Q  216 gcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcacta 315  Q
      ||||| ||| || ||||  |||||||| |||| | |||||||||| ||||| ||||||||||| ||||| || ||||||||||| |||| ||| ||||    
T  13413315 ttacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaacttctccactttgcttcctacttctgttacta 13413414  T
Q  316 tacc 319  Q
    ||||    
T  13413415 tacc 13413418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 13426353 - 13426636
Alignment:
Q  18 cgaagaggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaa 117  Q
    ||||||||||||||||||||||  || || |||||||||||| | | | | ||||| || || | ||| |||||| ||| |||||||||||| ||| |||    
T  13426353 cgaagaggactatacactgtgactccagcgcaaagaagaggaccggcaacatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaa 13426452  T
Q  118 ccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttcagc 217  Q
    |||||||||| || |||||||| ||||||  | ||||||||||||| || |||||||||||  ||||     | || || ||| | || |||| ||| ||    
T  13426453 ccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagcaccacatgtaactgtttgttgggggcagtaattctcaagatcttccgc 13426552  T
Q  218 acaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcc 301  Q
    ||||||||  || || |  |||||||| | |||| | || || || ||||| ||||||||||| ||||||||||||||||||||    
T  13426553 acaattttcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttcc 13426636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 13447012 - 13447156
Alignment:
Q  17 tcgaagaggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctaca 116  Q
    |||||||||||||||||||||||  || || |||||||||||| | | | | ||||| || || | ||| |||||| ||| |||||||||||||||| ||    
T  13447012 tcgaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgca 13447111  T
Q  117 accattgagtcagagtaacctccgtatgtggtggtgccatcacga 161  Q
    ||||||||||| ||| ||||||| || ||| | ||||||||||||    
T  13447112 accattgagtcggagaaacctccataggtgatagtgccatcacga 13447156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 13453965 - 13454271
Alignment:
Q  17 tcgaagaggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctaca 116  Q
    ||||||||||||||| || || || || |||||||| ||||||||||  || ||||| || ||   ||| |||||| ||| |||||||||||||||   |    
T  13453965 tcgaagaggactatatacggttatcccagcacaaaggagaggagcagctgcatcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaa 13454064  T
Q  117 accattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttcag 216  Q
    ||||||||||||||| | ||||| |  ||| |||| |||||||  ||||||| ||||   |||  ||| ||  | ||||| ||| | || ||||| |||     
T  13454065 accattgagtcagagaagcctccatgagtgctggttccatcactgtatttggaaccatcagtgagtgtcaattggggacagtaattctcaagattatcaa 13454164  T
Q  217 cacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactat 316  Q
    ||||||||||||| ||    || ||||| | || | | || ||||| ||| | |||||||||||||||||||  |||||||||||||||| ||| |||||    
T  13454165 cacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactat 13454264  T
Q  317 accaaca 323  Q
     ||||||    
T  13454265 gccaaca 13454271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 13379009 - 13379140
Alignment:
Q  27 ctatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattgagt 126  Q
    |||||||||||||| || |||||||| |||||||| | ||| |||||||  ||  ||||||||||  | || | |||||| ||||| |||||||| | ||    
T  13379009 ctatacactgtgatcccagcacaaaggagaggagcggcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtcgacaaccatggtgt 13379108  T
Q  127 cagagtaacctccgtatgtggtggtgccatca 158  Q
    ||||||| ||||| |||||| | |||||||||    
T  13379109 cagagtagcctccatatgtgatagtgccatca 13379140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 13393452 - 13393390
Alignment:
Q  258 acacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactatacca 320  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||| || |  ||||||||||||    
T  13393452 acacccactttgtctccaattttgaacttctctactttgcttcctacctccgtcactatacca 13393390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 13447259 - 13447299
Alignment:
Q  264 actttatctccaactttgaacttttctactttgcttcccac 304  Q
    ||||| ||||||||||| ||||||| |||||||||||||||    
T  13447259 actttgtctccaactttaaacttttttactttgcttcccac 13447299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University