View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20244_high_11 (Length: 317)
Name: NF20244_high_11
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20244_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 21642303 - 21642590
Alignment:
| Q |
12 |
atgaacatgaaatccaaatgggatataaaaggtccagatccaacaaaaccgaaaatcaatgttttgttgaaccatttcaagagaaaaacactttgtgctc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21642303 |
atgaacatgaaatccaaatgggatataaaaggtccaaatccaacaaaaccgaaaatcaatgttttgttgaaccatttcaagagaaaaacactttgtgctc |
21642402 |
T |
|
| Q |
112 |
aacttgattcattgcttcaacaaaccctaccttttcatcaagtttgggtgctttcgttcggaagtccaaacgaggcgtccctcaagagaatcgtggaaag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21642403 |
aacttgattcattgcttcaacaaaccctaccttttcatcaagtttgggtgctttctttcggcagtccaaacgaggcgtccctcaagagaatcgtggaaag |
21642502 |
T |
|
| Q |
212 |
ctataacgattcgcggataagtttcataagctcgagttacgattttaagtactatggaaggtttcaaatggctttgcagacagaagct |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21642503 |
ctataacgattcgcggataagtttcataagctcgagttatgattttaagtactatggaaggtttcaaatggctttgcagacagaagct |
21642590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University