View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20244_high_16 (Length: 293)
Name: NF20244_high_16
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20244_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 278
Target Start/End: Original strand, 53179844 - 53180110
Alignment:
| Q |
12 |
agaagcaaaggggcatgttacttagttcttgttccaccataatctgggaacttggaagagacaaagtccctttctagccaactacttattcaaacatgcg |
111 |
Q |
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| T |
53179844 |
agaatcaatggggcatgttacttagttcttgttccaccataatctgggaacttggaagagacaaagtccctttctagccaactacttattcaaacatgcg |
53179943 |
T |
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| Q |
112 |
cgtgtggtcacctttagccattaaagttgcccagctaagaccacaacaacagtctccaatgaaagttcaaattggatatgcaagccatgatcataactag |
211 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53179944 |
tgtgtggtcacctttaggcattaaagttgcccagctaagaccacaacaacagtctccaatgaaagttcaaattggatatgcaagccatgatcataactag |
53180043 |
T |
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| Q |
212 |
agatattgctatattaatttaatttgctttctcttcacgagcttcacataacttcttgttactatgt |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53180044 |
agatattgctatattaatttaatttgctttctcttcacgagcttcacataacttcttgttactatgt |
53180110 |
T |
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