View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20244_high_22 (Length: 236)
Name: NF20244_high_22
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20244_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 47601615 - 47601835
Alignment:
| Q |
4 |
aattagaatcaaaataaagtaatggaaaaagctaaga--atttctaagataatggtga-gtagtagtgattttaattaaagcatacccaggaactagtgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47601615 |
aattagaatcaaaataaagtaatggaaaaagctaagacaatttctaagataatggtgaagtagtggtgattttaattaaagcatacccaggaactagtgg |
47601714 |
T |
|
| Q |
101 |
ataggtggatataccccattcattcttaatcatgtggagatctgtgtgacatattccacaaaacaatattttgagtgacacatctttttcatttgtttcc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47601715 |
ataggtggatatgccccattcattcttaatcatgtggagatctgtgtgacatattccacaaaacaatattttgagtgacacatctttttcatttgtttcc |
47601814 |
T |
|
| Q |
201 |
ctgaaagtttggagacacaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
47601815 |
ctgaaagtttggagacacaat |
47601835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 13388899 - 13388771
Alignment:
| Q |
82 |
catacccaggaactagtggataggtggatataccccattcattcttaatcatgtggagatctgtgtgacatattccacaaaacaatattttgagtgacac |
181 |
Q |
| |
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||||||| |||||||| |||||||| ||||| |||||||||||||| |||||||| ||||| ||||||||| |||||| |||||||||||| || ||| |
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| T |
13388899 |
cataccccggaactaggggataggtagatattccccattcattcttcgccatgtggacatctgagtgacatatcccacaatacaatattttgaatgccac |
13388800 |
T |
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| Q |
182 |
atctttttcatttgtttccctgaaagttt |
210 |
Q |
| |
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| T |
13388799 |
atctttttcaccagtttctctgaaagttt |
13388771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 13385074 - 13384935
Alignment:
| Q |
71 |
tttaattaaagcatacccaggaactagtggataggtggatataccccattcattcttaatcatgtggagatctgtgtgacatattccacaaaacaatatt |
170 |
Q |
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|||||||| | ||||||| ||||||||||||||||| ||||| |||||||| ||||| |||| || ||||| |||||||||||||||| |||||||| |
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| T |
13385074 |
tttaattagaacataccccggaactagtggataggttgatatgccccattcgttcttcgccatgcagacatctgagtgacatattccacaatacaatatt |
13384975 |
T |
|
| Q |
171 |
ttgagtgacacatctttttcatttgtttccctgaaagttt |
210 |
Q |
| |
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|||| || |||||||||||| |||||| |||||||||| |
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| T |
13384974 |
ttgaatgccacatctttttctcctgtttctctgaaagttt |
13384935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 13393273 - 13393148
Alignment:
| Q |
84 |
tacccaggaactagtggataggtggatataccccattcattcttaatcatgtggagatctgtgtgacatattccacaaaacaatattttgagtgacacat |
183 |
Q |
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|
||||||||||||||||||||||| || || |||||||||||||| ||||| || ||||| | ||||||||| |||||| ||| || ||| | || ||||| |
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|
| T |
13393273 |
tacccaggaactagtggataggtagacatgccccattcattctttatcatatgaagatccgagtgacatatcccacaatacagtactttaaatgccacat |
13393174 |
T |
|
| Q |
184 |
ctttttcatttgtttccctgaaagtt |
209 |
Q |
| |
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|||||||| ||||| ||||||||| |
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|
| T |
13393173 |
ctttttcacccgtttctctgaaagtt |
13393148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 13426918 - 13427005
Alignment:
| Q |
79 |
aagcatacccaggaactagtggataggtggatataccccattcattcttaatcatgtggagatctgtgtgacatattccacaaaacaa |
166 |
Q |
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|
|||||||||| ||||||| ||||||| |||| | |||||||||||||| ||||| |||||||| ||||||||||| |||||| |||| |
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|
| T |
13426918 |
aagcataccctggaactaatggatagatggaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaa |
13427005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 13409363 - 13409251
Alignment:
| Q |
90 |
ggaactagtggataggtggatataccccattcattcttaatcatgtggagatctgtgtgacatattccacaaaacaatattttgagtgacacatcttttt |
189 |
Q |
| |
|
||||||| ||||||||||||| | |||||| | ||||| ||||||||| |||||||| |||||||| ||| |||| | ||||| || ||||||||| | |
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| T |
13409363 |
ggaactaatggataggtggatgtgccccatccgttcttggccatgtggaggtctgtgtggcatattccgcaatacaacactttgaatgccacatctttct |
13409264 |
T |
|
| Q |
190 |
catttgtttccct |
202 |
Q |
| |
|
|| ||||||||| |
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|
| T |
13409263 |
cacctgtttccct |
13409251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 13413961 - 13414091
Alignment:
| Q |
82 |
catacccaggaactagtggataggtggatataccccattcattcttaatcatgtggagatctgtgtgacatattccacaaaacaatattttgagtgacac |
181 |
Q |
| |
|
||||||||||||| ||||||||| ||| | ||||||||||||||| ||| |||||||| | ||||||||| |||||| |||| | |||| || || |
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| T |
13413961 |
catacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctac |
13414060 |
T |
|
| Q |
182 |
atctttttcatttgtttccctgaaagtttgg |
212 |
Q |
| |
|
|||||||||| |||||||| ||| ||||| |
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|
| T |
13414061 |
atctttttcaccagtttccctaaaattttgg |
13414091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 13419981 - 13420063
Alignment:
| Q |
79 |
aagcatacccaggaactagtggataggtggatataccccattcattcttaatcatgtggagatctgtgtgacatattccacaa |
161 |
Q |
| |
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|||||||||| ||||||| ||||||| |||| | |||||||||||||| ||||| ||||| || ||||| ||||| |||||| |
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| T |
13419981 |
aagcataccctggaactaatggatagatggaatttccccattcattcttcatcatatggaggtcagtgtggcatataccacaa |
13420063 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 28429396 - 28429345
Alignment:
| Q |
112 |
taccccattcattcttaatcatgtggagatctgtgtgacatattccacaaaa |
163 |
Q |
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|||||||||||||||| | |||||| ||||||| ||||||||| |||||||| |
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| T |
28429396 |
taccccattcattcttcaacatgtgaagatctgagtgacatataccacaaaa |
28429345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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