View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20244_high_4 (Length: 545)
Name: NF20244_high_4
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20244_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 201 - 534
Target Start/End: Complemental strand, 35710966 - 35710630
Alignment:
| Q |
201 |
aagcaacttattcatggaacatgatattaatcatgttttagtgcataacatacgctaacagtaggaaaagctt--aatatcttataatgatgatgtatga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||| |||| ||||||||||||||||||||||||| |
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| T |
35710966 |
aagcaacttattcatggaacatgatattaatcatgttttagtgcataatatacac-aacagtaagaaa-gcttctaatatcttataatgatgatgtatga |
35710869 |
T |
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| Q |
299 |
acaagctttgataaattcaaaagtgcatattttgcacatttgggattctgctcctgagattcacgt---aaaaaagcatcacaactttcttcattatctt |
395 |
Q |
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| T |
35710868 |
acaagctttgataaattcaaaagtgcatattttgcacatttgggattctgctcctgagattcacgtgtaaaaaaagcatcacaactttcttctttatctt |
35710769 |
T |
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| Q |
396 |
ttatcgaattttttgttccaatgtggtattaagctaattgatgctaagtccggtcgtttcgcgtgacactatttagccttaccaaacattgacatatcat |
495 |
Q |
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| T |
35710768 |
ttttcgaattttttgttccaatgtggtattaagctaattgatgctaagtccggtcgtttcgcgtgacactattttgccttaccaaacattgacatatcat |
35710669 |
T |
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| Q |
496 |
atcacatgcagttggtccaagttattcttttcgtttcat |
534 |
Q |
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| T |
35710668 |
atcacatgcaattggtccaagttattcttttcgtttcat |
35710630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 47104345 - 47104443
Alignment:
| Q |
18 |
aaagcatcccgtgtttgaatcatagtgtttgtagttaatatgaaccatacaactccattcttacac-aaagagagaccatggtatgaaaataagaaactt |
116 |
Q |
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| T |
47104345 |
aaagcatcccgtgtttgaatcatagtgtttgtagttaatatg-accatacaactccattcttatacaaaagagagaccatggtataaaaataagaaactt |
47104443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 47104497 - 47104576
Alignment:
| Q |
112 |
aacttcaaagacttaaaatttatttcaattattctttaattttgttgatcaagagaaaggggataaaataaatcttgctt |
191 |
Q |
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| T |
47104497 |
aacttcaaagacttaaaatttatttcaattattctttaattttgttgatcaagaaaaagaggatactataaaacttgctt |
47104576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 47104186 - 47104220
Alignment:
| Q |
24 |
tcccgtgtttgaatcatagtgtttgtagttaatat |
58 |
Q |
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| T |
47104186 |
tcccgtatttgaatcatagtgtttgtagttaatat |
47104220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 25574710 - 25574658
Alignment:
| Q |
24 |
tcccgtgtttgaatcatagtgtttgtagttaatatgaaccatacaactccatt |
76 |
Q |
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| T |
25574710 |
tcccgagtttgaatcatagtctttgtagttaatatgaaccatacaactccatt |
25574658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 26010174 - 26010122
Alignment:
| Q |
24 |
tcccgtgtttgaatcatagtgtttgtagttaatatgaaccatacaactccatt |
76 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26010174 |
tcccgggtttgaatcatagtctttgtagttaatatgaaccatacaactccatt |
26010122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 26011396 - 26011350
Alignment:
| Q |
30 |
gtttgaatcatagtgtttgtagttaatatgaaccatacaactccatt |
76 |
Q |
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| T |
26011396 |
gtttgaatcatagtctttgtagttaatatgaaccatacaactccatt |
26011350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 26127660 - 26127615
Alignment:
| Q |
31 |
tttgaatcatagtgtttgtagttaatatgaaccatacaactccatt |
76 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26127660 |
tttgaatcatagtctttgtagttaatatgaaccatacaactccatt |
26127615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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