View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20244_high_5 (Length: 496)
Name: NF20244_high_5
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20244_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 14948141 - 14948289
Alignment:
| Q |
19 |
caacgattttccataatatttgaaaagattgagatttgaaattgttcattgttgcgatgaactccaattattccaagacaatcttttataaattgcatac |
118 |
Q |
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| T |
14948141 |
caacgattttccataatatttgaaaagattgagatttgaaattgttcattgttgcgatgaactccaattattccaagacaatcttttataaattgcatac |
14948240 |
T |
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| Q |
119 |
tttcagaaccaaattaaacatcaaactctcaaatatacaaaatcaatct |
167 |
Q |
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| T |
14948241 |
tttcagaaccaaattaaatatcaaactctcaaatatacaaaatcaatct |
14948289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 286 - 453
Target Start/End: Original strand, 14948838 - 14948998
Alignment:
| Q |
286 |
tccacttaggtcccctccaagtaaacttagtccctgttgtagtaacctccatcaaactacggtcatgtcattgattcgattgttaaaattctgacatttt |
385 |
Q |
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| T |
14948838 |
tccacttaggtcccctccaagtaaacttagtcc-tgctgtagtaacttccatcaacctacggtgat-----tgattcgattgttaaaattctgacatttt |
14948931 |
T |
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| Q |
386 |
ctaatgtccacctgcactcctccttttttctcatttggatttgaaatctcattgaaatcacccatcat |
453 |
Q |
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| T |
14948932 |
ctaatgtccacctgcactcctcc-tttttctcatttggatttgcaatcttattgaaatcacccatcat |
14948998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 14948701 - 14948793
Alignment:
| Q |
175 |
ctcagtatgaacaataatagggtggtgatcagactgcacatgcggaaagactttagctatcccatcgtgaaatctcaatctccaactgacatt |
267 |
Q |
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| T |
14948701 |
ctcagtatgaacaataatagggtggtgatcatactgcacacccgaaaagactttagctatcccatcatgaaatctcaatctccaactgacatt |
14948793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 480
Target Start/End: Original strand, 14949029 - 14949057
Alignment:
| Q |
452 |
atggtgaagcttttgccatgtttcgttcc |
480 |
Q |
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| T |
14949029 |
atggtgaagcttttgccatgtttcgttcc |
14949057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 31046212 - 31046270
Alignment:
| Q |
74 |
gatgaactccaattattccaagacaatcttttataaattgcatactttcagaaccaaat |
132 |
Q |
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| T |
31046212 |
gatgaactccaatgatttcaagacattattttataaattgcatattttcaaaaccaaat |
31046270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 29544550 - 29544478
Alignment:
| Q |
67 |
ttgttgcgatgaactccaattattccaagacaatcttttataaattgcatactttcagaaccaaattaaacat |
139 |
Q |
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| T |
29544550 |
ttgttgtgatgaactctgatgattctaagtcaatattttataaattgcatattttcaaaacaaaatcaaacat |
29544478 |
T |
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