View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20244_low_1 (Length: 733)

Name: NF20244_low_1
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20244_low_1
NF20244_low_1
[»] chr4 (4 HSPs)
chr4 (18-191)||(35155243-35155418)
chr4 (18-191)||(35162264-35162439)
chr4 (115-169)||(15555936-15555990)
chr4 (20-77)||(15555839-15555896)
[»] chr8 (2 HSPs)
chr8 (18-191)||(9692843-9693018)
chr8 (19-191)||(9675821-9675995)
[»] chr3 (18 HSPs)
chr3 (114-188)||(46549115-46549189)
chr3 (115-169)||(51943814-51943868)
chr3 (115-168)||(5156169-5156222)
chr3 (115-169)||(46483972-46484026)
chr3 (110-168)||(46526573-46526630)
chr3 (115-168)||(5160199-5160251)
chr3 (115-164)||(46538909-46538958)
chr3 (108-168)||(45902871-45902931)
chr3 (115-169)||(46490633-46490687)
chr3 (121-169)||(46479720-46479768)
chr3 (115-170)||(46554333-46554388)
chr3 (18-84)||(46473754-46473820)
chr3 (20-95)||(45883958-45884033)
chr3 (115-169)||(16025405-16025459)
chr3 (115-169)||(46473853-46473907)
chr3 (115-169)||(46544381-46544435)
chr3 (116-169)||(46531844-46531897)
chr3 (133-166)||(47414343-47414376)
[»] chr7 (4 HSPs)
chr7 (115-188)||(17708197-17708270)
chr7 (115-188)||(17718021-17718094)
chr7 (115-169)||(17735851-17735905)
chr7 (115-188)||(17745032-17745105)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 8e-57; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 35155243 - 35155418
Alignment:
Q  18 caagggtcagtcgacagcttaaccagactcgtccttgttaatgcactgtattttaaaggagcatggattcaaccgtttcctaaatatatgacaaaa--at 115  Q
    |||| ||| ||| ||| ||||||||||||| || ||| |||||||||||||||||||||||| ||||||||||||||| ||| || ||||||||||  ||    
T  35155243 caagagtcggtcaacaacttaaccagactcatctttgctaatgcactgtattttaaaggagcttggattcaaccgttttctagatgtatgacaaaaaaat 35155342  T
Q  116 atgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgatcagtttatcagagc 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  35155343 atgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgatcaatttattagagc 35155418  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 35162264 - 35162439
Alignment:
Q  18 caagggtcagtcgacagcttaaccagactcgtccttgttaatgcactgtattttaaaggagcatggattcaaccgtttcctaaatatatgacaaaaa--t 115  Q
    |||||||||||||||| | ||||||||||  || ||| ||| ||||||||||||||||||||||||| |    | ||| |||| |||  |||| |||  |    
T  35162264 caagggtcagtcgacaacctaaccagacttatctttgctaacgcactgtattttaaaggagcatggagtagtacattttctaagtatgcgacacaaaact 35162363  T
Q  116 atgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgatcagtttatcagagc 191  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||||||||||| |||||    
T  35162364 atgattttcaccttctgaatggaagctcagtcaaggttcccttcatgactaccaaccttgatcagtttattagagc 35162439  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 15555936 - 15555990
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagca 169  Q
    ||||||||||||||||| ||||| |||||| |||||||||| || |||| |||||    
T  15555936 tatgattttcaccttctcaatggtagctcactcaaggttccgtttatgagcagca 15555990  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 15555839 - 15555896
Alignment:
Q  20 agggtcagtcgacagcttaaccagactcgtccttgttaatgcactgtattttaaagga 77  Q
    |||||| ||| ||||||||||||||||| || |||  ||||||||||| |||||||||    
T  15555839 agggtcggtcaacagcttaaccagactcatctttgcaaatgcactgtactttaaagga 15555896  T

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Target: chr8 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 9693018 - 9692843
Alignment:
Q  18 caagggtcagtcgacagcttaaccagactcgtccttgttaatgcactgtattttaaaggagcatggattcaaccgtttcctaaatatatgacaaa--aat 115  Q
    |||| |||||| |||||||||||||||||| || ||| ||||||| ||||||||||||||||||||| | | || ||||||   |  | |||||   |||    
T  9693018 caagcgtcagttgacagcttaaccagactcatctttgctaatgcattgtattttaaaggagcatggagtaatccttttcctgcttggaggacaagcgaat 9692919  T
Q  116 atgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgatcagtttatcagagc 191  Q
    ||||||||||||||| |||||||||||||||||||||||| || |||| ||||| ||||||||||||||| |||||    
T  9692918 atgattttcaccttccgaatggcagctcagtcaaggttccttttatgagcagcaaccttgatcagtttattagagc 9692843  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 9675995 - 9675821
Alignment:
Q  19 aagggtcagtcgacagcttaaccagactcgtccttgttaatgcactgtattttaaaggagcatggattcaaccgtttcctaaatatatgac--aaaaata 116  Q
    ||||||| ||| ||| ||||||||||||| || ||| ||||||||| ||||||||||||| |||| || | |  |||  | | ||||  ||  |||| ||    
T  9675995 aagggtcggtcaacaacttaaccagactcatctttgctaatgcactatattttaaaggagaatgggttgatcaattttttgattataataccgaaaacta 9675896  T
Q  117 tgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgatcagtttatcagagc 191  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||| || || ||||||||||||||| |||||    
T  9675895 tgattttcaccttctgaatggcagctcagtcaaagttccctttatgagcaccaaccttgatcagtttattagagc 9675821  T

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Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 46549189 - 46549115
Alignment:
Q  114 atatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgatcagtttatcag 188  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||   |||||||||||||||    
T  46549189 atatgattttcaccttctcaatggcagctcggtcaaggttcccttcataaccagcaggaatgatcagtttatcag 46549115  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 51943814 - 51943868
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagca 169  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  51943814 tatgattttcaccttctaaatggtagctcagtcaaggttcccttcatgaccagca 51943868  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 5156169 - 5156222
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagc 168  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  5156169 tatgattttcaccttttgaatggcagctcggtcaaggttcccttcatgaccagc 5156222  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 46483972 - 46484026
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagca 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||    
T  46483972 tatgattttcaccttctcaatggcagctcagtcaaggttccctttatgactagca 46484026  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 46526630 - 46526573
Alignment:
Q  110 aaaaatatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagc 168  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  46526630 aaaactatgattttcacctt-taaatggcagctcagtcaaggttcccttcatgaccagc 46526573  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 5160199 - 5160251
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagc 168  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  5160199 tatgattttcaccttttgaatgg-agctcagtcaaggttcccttcatgaccagc 5160251  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 46538909 - 46538958
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgac 164  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  46538909 tatgattttaaccttcttaatggcagctcagtcaaggttcccttcatgac 46538958  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 45902871 - 45902931
Alignment:
Q  108 acaaaaatatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagc 168  Q
    |||||| ||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||    
T  45902871 acaaaactataatttttaccttctaaatggtagctcagtcaaggttcccttcatgaccagc 45902931  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 46490633 - 46490687
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagca 169  Q
    ||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||    
T  46490633 tatgattttcaccttttgaatggcagctcaattaaggttcccttcatgactagca 46490687  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 46479720 - 46479768
Alignment:
Q  121 tttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagca 169  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  46479720 tttcaccttttgaatggtagcccagtcaaggttcccttcatgaccagca 46479768  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 46554388 - 46554333
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcag 170  Q
    |||||||||||||||||  |||| |||||| ||||||||||||||| |||||||||    
T  46554388 tatgattttcaccttcttgatggtagctcattcaaggttcccttcaagaccagcag 46554333  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 46473754 - 46473820
Alignment:
Q  18 caagggtcagtcgacagcttaaccagactcgtccttgttaatgcactgtattttaaaggagcatgga 84  Q
    ||||||||| || ||| |||| ||||||||||| ||| ||||||| |||||||||||||| ||||||    
T  46473754 caagggtcaatcaacaacttatccagactcgtctttgctaatgcattgtattttaaaggatcatgga 46473820  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 45884033 - 45883958
Alignment:
Q  20 agggtcagtcgacagcttaaccagactcgtccttgttaatgcactgtattttaaaggagcatggattcaaccgttt 95  Q
    |||||||||  ||| ||||||||||||| |  ||| ||||||| |||| ||||| |||||||||| ||||||||||    
T  45884033 agggtcagttaacaacttaaccagactcatatttgctaatgcattgtactttaagggagcatggaatcaaccgttt 45883958  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 16025405 - 16025459
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagca 169  Q
    |||||||||||| |||||||||||| |  | |||| |||||||||||||||||||    
T  16025405 tatgattttcacattctgaatggcaacgtaatcaaagttcccttcatgaccagca 16025459  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 46473853 - 46473907
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagca 169  Q
    ||||||||| ||||||| |||||||||||||| |||||| |||| ||||| ||||    
T  46473853 tatgatttttaccttctcaatggcagctcagttaaggtttcctttatgactagca 46473907  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 46544381 - 46544435
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagca 169  Q
    ||||||||| ||||||| |||||||||  |||||||||||| |||||||| ||||    
T  46544381 tatgattttaaccttctcaatggcagccaagtcaaggttcctttcatgacaagca 46544435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 46531844 - 46531897
Alignment:
Q  116 atgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagca 169  Q
    ||||||||||||||||   |||||||||| | ||||||||||||||||| ||||    
T  46531844 atgattttcaccttctcggtggcagctcaattaaggttcccttcatgactagca 46531897  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 47414376 - 47414343
Alignment:
Q  133 aatggcagctcagtcaaggttcccttcatgacca 166  Q
    ||||| ||||||||||||||||||||||||||||    
T  47414376 aatggaagctcagtcaaggttcccttcatgacca 47414343  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 17708197 - 17708270
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgatcagtttatcag 188  Q
    ||||||||| ||||||| |||||||  ||||| ||||||||||| ||||||||||    |||||||||||||||    
T  17708197 tatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaatgatcagtttatcag 17708270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 17718021 - 17718094
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgatcagtttatcag 188  Q
    ||||||||| ||||||| |||||||  ||||| ||||||||||| ||||||||||    |||||||||||||||    
T  17718021 tatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaatgatcagtttatcag 17718094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 17735851 - 17735905
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagca 169  Q
    ||||||||| ||||||| |||||||  ||||| ||||||||||| ||||||||||    
T  17735851 tatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagca 17735905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 17745032 - 17745105
Alignment:
Q  115 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgatcagtttatcag 188  Q
    ||||||||| ||||||| || ||||  ||||| ||||||||||| ||||||||||    |||||||||||||||    
T  17745032 tatgattttgaccttcttaacggcaagtcagtaaaggttccctttatgaccagcaagaatgatcagtttatcag 17745105  T

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