View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20244_low_16 (Length: 299)
Name: NF20244_low_16
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20244_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 289
Target Start/End: Original strand, 34594395 - 34594668
Alignment:
| Q |
15 |
aaaaactatttacattaaaagggaattgattaaatacctttctttagggcttataccattgttttcacaattatcatacttcaaatagtcaattccctaa |
114 |
Q |
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| T |
34594395 |
aaaaactatttacatttgaaggggattgattaaatacctttctttagggcttataccattgttttcacaattatcatacttcaaatagtcaattccctaa |
34594494 |
T |
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| Q |
115 |
agaaaaatttaaatcagttattgatttttctcaacaacaaaaaatcatatatttgttagcacattaaacttctatatagaatgcaatatgataaaaaatt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||| |
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| T |
34594495 |
agaaaaatttaaatcagttattgatttttctcaacaacaaaaaatcatatatttgttagcacattaaacttgtacatagaatgcaatatgat-aaaaatt |
34594593 |
T |
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| Q |
215 |
aaaacgactttcaaataatgtaatgtatatattataatacccaagaagcaaatgttttagcatcttgttcttcat |
289 |
Q |
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| T |
34594594 |
aaaacgactttcaaataatgtaatgtatatattataatacccaagaagcaaatgttttagcatcttgttcttcat |
34594668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 35124401 - 35124490
Alignment:
| Q |
39 |
attgattaaatacctttctttagggcttataccattgttttcacaattatcatacttcaaatagtcaattccctaaagaaaaatttaaat |
128 |
Q |
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| T |
35124401 |
attgattaaatacctttctctaacgcttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaattttaaat |
35124490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 34578735 - 34578802
Alignment:
| Q |
63 |
gcttataccattgttttcacaattatcatacttcaaatagtcaattccctaaagaaaaatttaaatca |
130 |
Q |
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| T |
34578735 |
gcttattccgttattttcacaattatcatacttcaaatagtcaactccctaaacaaaaatttaaatca |
34578802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 35124563 - 35124608
Alignment:
| Q |
236 |
aatgtatatattataatacccaagaagcaaatgttttagcatcttgt |
282 |
Q |
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| T |
35124563 |
aatgtatatatgata-tacccaagaagcaaatgttttggcatcttgt |
35124608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 32601369 - 32601450
Alignment:
| Q |
43 |
attaaatacctttctttagggcttataccattgttttcacaattatcatacttcaaatagtcaattccctaaagaaaaattt |
124 |
Q |
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| T |
32601369 |
attaaatacctttctctaacgcttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaattt |
32601450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 32590900 - 32590989
Alignment:
| Q |
43 |
attaaatacctttctttagggcttataccattgttttcacaattatcatacttcaaatagtcaattccctaaagaaaaatttaaatcagt |
132 |
Q |
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| T |
32590900 |
attaaatacctttctctaacgcttataccattattgtgacaattatcatacttcaaatagtcgactccctaaagaaaattttaaatcagt |
32590989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 24883190 - 24883123
Alignment:
| Q |
49 |
tacctttctttagggcttataccattgttttcacaattatcatacttcaaatagtcaattccctaaag |
116 |
Q |
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| T |
24883190 |
tacctttctttgggggttacatcattattctcacaattatcatacttcaagtagtcaattccctaaag |
24883123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 32591041 - 32591106
Alignment:
| Q |
215 |
aaaacgactttcaaataatgtaatgtatatattataatacccaagaagcaaatgttttagcatcttgt |
282 |
Q |
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|||| ||||||||||||||||| ||||||| | ||| ||||||||||||||||||||| ||||||||| |
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| T |
32591041 |
aaaatgactttcaaataatgta-tgtatatgtgata-tacccaagaagcaaatgttttggcatcttgt |
32591106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 24883063 - 24883021
Alignment:
| Q |
247 |
tataatacccaagaagcaaatgttttagcatcttgttcttcat |
289 |
Q |
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| T |
24883063 |
tatattacccatgaagcaaatgtttttgcatcttgttcttcat |
24883021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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