View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20244_low_19 (Length: 266)
Name: NF20244_low_19
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20244_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 1338248 - 1338011
Alignment:
| Q |
19 |
atttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttcttatgtatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1338248 |
atttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttcttatgtatc |
1338149 |
T |
|
| Q |
119 |
tgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccactgttgtaacaagggccgagcctcataatcaggttgttatttgaagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1338148 |
tgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccacggttgtaacaagggccgagcctcataatcaggttgttatttgaagt |
1338049 |
T |
|
| Q |
219 |
tgtgtacattatattttgtaaaactaatgccacctatg |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1338048 |
tgtgtacattatattttgtaaaactaatgccacttatg |
1338011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 31940061 - 31939829
Alignment:
| Q |
19 |
atttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttcttatgtatc |
118 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31940061 |
atttgttcgtgggacctcttctaagtatgtatatatgtacatctattttaggtcatcatattttatgtctatttcatctatatcaaagttcttatgtatc |
31939962 |
T |
|
| Q |
119 |
tgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccactgttgtaacaagggccgagcctcataatcaggttgttatttgaagt |
218 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||||||| |
|
|
| T |
31939961 |
ttctgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtctactgttgtaacaagggctgagcctcataatcaggttattgtttgaagt |
31939862 |
T |
|
| Q |
219 |
tgtgtacattatattttgtaaaactaatgccac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31939861 |
tgtgtacattatattttgtaaaactaatgccac |
31939829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 13536295 - 13536063
Alignment:
| Q |
19 |
atttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttc--ttatgta |
116 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||| |||| | | ||||| |||||||| |||||||||| | ||||| |||||| ||||||| |
|
|
| T |
13536295 |
atttgttcgtgggacttcctctaagtatgtatatatgcacatta---tcatgtcaacatattttctgtttatttcctttatattaaagtttgtttatgta |
13536199 |
T |
|
| Q |
117 |
tctgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccactgttgtaacaagggccgagcctcataatcaggttgttatttgaa |
216 |
Q |
| |
|
| || || | |||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||| ||||| | | |
|
|
| T |
13536198 |
tatg---aaaataacaggccatttggccgactttggtgggacgaaattgtgtctactgttgtaacgagagccgaacctcataatcaggttattattag-a |
13536103 |
T |
|
| Q |
217 |
gttgtgtacattatattttgtaaaactaatgccacctatg |
256 |
Q |
| |
|
| ||| | |||| ||||||||||||||||||||| |||| |
|
|
| T |
13536102 |
ggtgttcatattacattttgtaaaactaatgccacttatg |
13536063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 9390414 - 9390174
Alignment:
| Q |
19 |
atttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttcttatgtatc |
118 |
Q |
| |
|
||||||||| |||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
9390414 |
atttgttcgtgggacctcttctaagtatgtacatatgtacatctattttaggtcatcatattttatgtctattttatctatatcaaagttctcatgtatc |
9390315 |
T |
|
| Q |
119 |
tgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccactgttgtaacaagggccgagcctcataatcaggttgttatttgaagt |
218 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
9390314 |
tgttgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttgaagt |
9390215 |
T |
|
| Q |
219 |
tgtgtacattatattttgtaaaactaatgccacctatgcta |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9390214 |
tgtgtacattatattttgtaaaactaatgccacttatgcta |
9390174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 5640137 - 5639896
Alignment:
| Q |
18 |
aatttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttcttatgtat |
117 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| || | || ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
5640137 |
aatttgttcgggggacttcctctaagtatgtatatttgcatatgaatttaatgtcatcatattttatgtttatttcatctatatcatagttcttatttat |
5640038 |
T |
|
| Q |
118 |
ctgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccactgttgtaacaagggccgagcctcataatcaggttgttatttgaag |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| || ||||| || |||||| || || ||| |
|
|
| T |
5640037 |
ctgctgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtccacagttgtgacccgggcggaacctcacaaccaggttatttttctaag |
5639938 |
T |
|
| Q |
218 |
ttgtgtacattatattttgtaaaactaatgccacctatgcta |
259 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
5639937 |
ttgtgtacattatattttgtaaatccaatgccacttatgcta |
5639896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University