View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20244_low_21 (Length: 246)
Name: NF20244_low_21
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20244_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 35409839 - 35409602
Alignment:
| Q |
1 |
ccttgcttaccaccattatctggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaatt |
100 |
Q |
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| T |
35409839 |
ccttgcttaccaccattatctggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaatt |
35409740 |
T |
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| Q |
101 |
aatgcgaaaattaattcctaatgaggaggttcctgatcacgcggcctttgtcaaggatccgcagagatactttctatcatcactgccaagcttatttcag |
200 |
Q |
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| T |
35409739 |
aatgcgaaaattaattcctaatgaggaggttcctgatcacgcggcctttgtcaaggatccgcagagatactttctatcatcactgccaagcttatttcag |
35409640 |
T |
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| Q |
201 |
gcaacaaagttcatggctgtgattaacacaggttctgc |
238 |
Q |
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| T |
35409639 |
gcaacaaagttcatggctgtgattaacataggttctgc |
35409602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 35408311 - 35408243
Alignment:
| Q |
167 |
atactttctatcatcactgccaagcttatttcaggcaacaaagttcatggctgtgattaacacaggttc |
235 |
Q |
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| T |
35408311 |
atactttctgtcatcactgccaagtttatttcaggcgaaaaggttcatggctgtgatcaacataggttc |
35408243 |
T |
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