View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20244_low_22 (Length: 243)
Name: NF20244_low_22
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20244_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41008730 - 41008953
Alignment:
| Q |
1 |
tggaaacagtttagtttagcattaaaaatgagaaacaagaccatggtcaaaatatgaacgacaaaagtaattactataatgatgtgatcaaactcccnnn |
100 |
Q |
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| T |
41008730 |
tggaaacagtttagtttagcattaaaaatgagaaacaagaccatggtcaaaatatgaacgacaaaagtaattactataatgatgtgatcaaactcccaaa |
41008829 |
T |
|
| Q |
101 |
nnnngaataaaatcgtaataattaacattgtagtaaccaactaagatgacccctctaaatttttacattaagatccaaaaattcggaatcatg--tcatc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41008830 |
aaaagaataaaatcgtaataattaacattgtagtaaccaactaagatgacccctctaaatttttacattaagatccaaaaattcggaatcatgtctcatc |
41008929 |
T |
|
| Q |
199 |
tgattttcagccaattagtaaatg |
222 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
41008930 |
tgattttcagccaattagtaaatg |
41008953 |
T |
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