View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20244_low_5 (Length: 540)

Name: NF20244_low_5
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20244_low_5
NF20244_low_5
[»] chr2 (4 HSPs)
chr2 (143-540)||(4238902-4239290)
chr2 (95-147)||(4239306-4239358)
chr2 (18-57)||(4239354-4239393)
chr2 (244-281)||(20970637-20970674)
[»] chr6 (5 HSPs)
chr6 (226-439)||(15501338-15501551)
chr6 (246-359)||(9994266-9994379)
chr6 (247-287)||(34312077-34312117)
chr6 (247-287)||(4502531-4502571)
chr6 (247-287)||(15826083-15826123)
[»] scaffold0141 (1 HSPs)
scaffold0141 (446-540)||(7619-7713)
[»] chr7 (4 HSPs)
chr7 (451-540)||(8429840-8429929)
chr7 (446-514)||(8449508-8449576)
chr7 (247-287)||(26083081-26083121)
chr7 (247-287)||(26106868-26106908)
[»] chr1 (1 HSPs)
chr1 (224-297)||(46655258-46655331)
[»] chr4 (2 HSPs)
chr4 (247-350)||(43577839-43577942)
chr4 (224-296)||(8165286-8165358)
[»] scaffold1049 (1 HSPs)
scaffold1049 (247-287)||(197-237)
[»] chr8 (3 HSPs)
chr8 (247-347)||(15297172-15297272)
chr8 (247-347)||(15477541-15477641)
chr8 (244-284)||(28392565-28392605)
[»] chr5 (2 HSPs)
chr5 (247-287)||(548670-548710)
chr5 (247-287)||(30279082-30279122)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 143 - 540
Target Start/End: Complemental strand, 4239290 - 4238902
Alignment:
Q  143 gctactctacctattgcaagattttctcataactcacataacacccattatcttatactgtataataaatttgcactacatatatagttgctaaccctgt 242  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4239290 gctactctacctattgcaagattttctcataac---------acccattatcttatactgtataataaatttgcactacatatatagttgctaaccctgt 4239200  T
Q  243 attccatgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaagtgcaggcaggactaattcacctgctaccagtatcctcaaaagaa 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4239199 attccatgagagaacaaagcacatagaaattgattgtcatgttgttagagacaaagtgcaggcaggactaattcacctgctaccagtatcctcaaaagaa 4239100  T
Q  343 caagttgccgacatttttactagaccattgcaccatgggcctttcaacactctacaaatcaagcttggaacaaccaacatccattctagcttcaggggga 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  4239099 caagttgccgacatttttactagaccattgcaccatgggcctttcaacactctacaaatcaagcttggaacaatcatcatccattctagcttgaggggga 4239000  T
Q  443 ctattaaaggatgattagattgggatgcatctgctacttgtgtagcaagcaactatgtgaaactcaactagcttaaacggttgtaactgaatttagtt 540  Q
    |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4238999 ctattaaaggataattagattgggatgcatatgttacttgtgtagcaagcaactatgtgaaactcaactagcttaaacggttgtaactgaatttagtt 4238902  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 4239358 - 4239306
Alignment:
Q  95 tggtatcaagatcttcatcaaaagctgaatacaaaagcacttgtacaagctac 147  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4239358 tggtatcaagatcttcatcaaaagctgaatagaaaagcacttgtacaagctac 4239306  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 4239393 - 4239354
Alignment:
Q  18 actagaagatccaccattggcttctgtttcttccatggta 57  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4239393 actagaagatccaccattggcttctgtttcttccatggta 4239354  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 20970674 - 20970637
Alignment:
Q  244 ttccatgagagaacaaagcacatagaaattgattgtca 281  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  20970674 ttccatgagagaacaaaacacttagaaattgattgtca 20970637  T

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Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 226 - 439
Target Start/End: Original strand, 15501338 - 15501551
Alignment:
Q  226 atagttgctaaccctgtattccatgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaagtgcaggcaggactaattcacctgctac 325  Q
    |||||||||||||||| |||  |||||||||||||||| ||||||| |||||||||||| ||||| || |||||| ||||| |||||||||| |||||||    
T  15501338 atagttgctaaccctgcattttatgagagaacaaagcatatagaaaatgattgtcatgtggttagagataaagtgaaggcatgactaattcatctgctac 15501437  T
Q  326 cagtatcctcaaaagaacaagttgccgacatttttactagaccattgcaccatgggcctttcaacactctacaaatcaagcttggaacaaccaacatcca 425  Q
      ||||||||||||||||| |||||  ||||  | || | |||||| || | ||| | |||||||| | |  ||| |||||||||||||| ||||||  |    
T  15501438 ttgtatcctcaaaagaacatgttgcttacatcatgacaaaaccattacatcttggtcttttcaacaatttcaaaagcaagcttggaacaatcaacattta 15501537  T
Q  426 ttctagcttcaggg 439  Q
    ||| ||||| ||||    
T  15501538 ttccagcttgaggg 15501551  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 9994266 - 9994379
Alignment:
Q  246 ccatgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaagtgcaggcaggactaattcacctgctaccagtatcctcaaaagaacaa 345  Q
    |||||| ||||| || ||||| |||||||| ||||||||  | || ||||||||||||| |||| |||||||| |||||||| ||||||||||||| |||    
T  9994266 ccatgaaagaactaaacacattgaaattgactgtcatgtaataagggacaaagtgcaggtaggagtaattcacttgctaccaatatcctcaaaagaccaa 9994365  T
Q  346 gttgccgacatttt 359  Q
    ||||| || |||||    
T  9994366 gttgctgatatttt 9994379  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 34312077 - 34312117
Alignment:
Q  247 catgagagaacaaagcacatagaaattgattgtcatgttgt 287  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  34312077 catgagagaacaaaacacattgaaattgattgtcatgttgt 34312117  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 4502531 - 4502571
Alignment:
Q  247 catgagagaacaaagcacatagaaattgattgtcatgttgt 287  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  4502531 catgagagaacaaaacacattgagattgattgtcatgttgt 4502571  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 15826083 - 15826123
Alignment:
Q  247 catgagagaacaaagcacatagaaattgattgtcatgttgt 287  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  15826083 catgagagaacaaaacacattgagattgattgtcatgttgt 15826123  T

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Target: scaffold0141 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 446 - 540
Target Start/End: Complemental strand, 7713 - 7619
Alignment:
Q  446 ttaaaggatgattagattgggatgcatctgctacttgtgtagcaagcaactatgtgaaactcaactagcttaaacggttgtaactgaatttagtt 540  Q
    |||| |||| ||||| ||| ||||||| || ||||||||||||||| |||| ||||||||| ||||||| |||||  |||||||  |||||||||    
T  7713 ttaagggataattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaatttagtt 7619  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 540
Target Start/End: Original strand, 8429840 - 8429929
Alignment:
Q  451 ggatgattagattgggatgcatctgctacttgtgtagcaagcaactatgtgaaactcaactagcttaaacggttgtaactgaatttagtt 540  Q
    |||| ||||| ||| ||||||| || ||||||||||||||| |||| ||||||||| ||||||| |||||  |||||||  |||||||||    
T  8429840 ggataattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaatttagtt 8429929  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 514
Target Start/End: Complemental strand, 8449576 - 8449508
Alignment:
Q  446 ttaaaggatgattagattgggatgcatctgctacttgtgtagcaagcaactatgtgaaactcaactagc 514  Q
    |||| |||| ||||| ||| ||||||| || ||||||||||||||| |||| ||||||||| |||||||    
T  8449576 ttaagggataattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagc 8449508  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 26083121 - 26083081
Alignment:
Q  247 catgagagaacaaagcacatagaaattgattgtcatgttgt 287  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  26083121 catgagagaacaaaacacattgagattgattgtcatgttgt 26083081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 26106908 - 26106868
Alignment:
Q  247 catgagagaacaaagcacatagaaattgattgtcatgttgt 287  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  26106908 catgagagaacaaaacacattgagattgattgtcatgttgt 26106868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 46655258 - 46655331
Alignment:
Q  224 atatagttgctaaccctgtattccatgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaa 297  Q
    |||||| |||||||||||| ||||||||||| |||||||| || || |||||||||||||| || || ||||||    
T  46655258 atatagctgctaaccctgttttccatgagaggacaaagcatattgagattgattgtcatgtagtaagagacaaa 46655331  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 350
Target Start/End: Original strand, 43577839 - 43577942
Alignment:
Q  247 catgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaagtgcaggcaggactaattcacctgctaccagtatcctcaaaagaacaag 346  Q
    ||||| |||||||| |||||||| || || |||||||| ||||| |||||||| || | |||  | |||||  | ||||||||||| ||||| |||||||    
T  43577839 catgaaagaacaaaacacatagagatggactgtcatgtagttagagacaaagtacaagaaggcatcattcatttactaccagtatcatcaaaggaacaag 43577938  T
Q  347 ttgc 350  Q
    ||||    
T  43577939 ttgc 43577942  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 8165286 - 8165358
Alignment:
Q  224 atatagttgctaaccctgtattccatgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaa 296  Q
    |||||||||| || || || |||||||| || ||||| || ||||| ||||||||||||||||| || |||||    
T  8165286 atatagttgcaaatcccgtcttccatgaaaggacaaaacatatagagattgattgtcatgttgtgagagacaa 8165358  T

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Target: scaffold1049 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 237 - 197
Alignment:
Q  247 catgagagaacaaagcacatagaaattgattgtcatgttgt 287  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  237 catgagagaacaaaacacattgatattgattgtcatgttgt 197  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 347
Target Start/End: Original strand, 15297172 - 15297272
Alignment:
Q  247 catgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaagtgcaggcaggactaattcacctgctaccagtatcctcaaaagaacaag 346  Q
    ||||||||||| ||||||||||| || || |||||||| ||||| ||| ||||||| ||| |  | |||||| | |||||||| || |||||  ||||||    
T  15297172 catgagagaaccaagcacatagagatggactgtcatgtggttagagaccaagtgcaagcatgcatcattcacttactaccagtctcatcaaagaaacaag 15297271  T
Q  347 t 347  Q
    |    
T  15297272 t 15297272  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 347
Target Start/End: Original strand, 15477541 - 15477641
Alignment:
Q  247 catgagagaacaaagcacatagaaattgattgtcatgttgttagcgacaaagtgcaggcaggactaattcacctgctaccagtatcctcaaaagaacaag 346  Q
    ||||||||||| ||||||||||| || || |||||||| ||||| ||| ||||||| ||| |  | |||||| | |||||||| || |||||  ||||||    
T  15477541 catgagagaaccaagcacatagagatggactgtcatgtggttagagaccaagtgcaagcatgcatcattcacttactaccagtctcatcaaagaaacaag 15477640  T
Q  347 t 347  Q
    |    
T  15477641 t 15477641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 28392605 - 28392565
Alignment:
Q  244 ttccatgagagaacaaagcacatagaaattgattgtcatgt 284  Q
    ||||||||||||||||||||  ||||||| |||||||||||    
T  28392605 ttccatgagagaacaaagcatgtagaaatcgattgtcatgt 28392565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 548710 - 548670
Alignment:
Q  247 catgagagaacaaagcacatagaaattgattgtcatgttgt 287  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  548710 catgagagaacaaaacacattgagattgattgtcatgttgt 548670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 30279122 - 30279082
Alignment:
Q  247 catgagagaacaaagcacatagaaattgattgtcatgttgt 287  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  30279122 catgagagaacaaaacacattgagattgattgtcatgttgt 30279082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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