View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20244_low_7 (Length: 494)
Name: NF20244_low_7
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20244_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 3660078 - 3659641
Alignment:
| Q |
1 |
ttgaagaatttgagggggagagttgagaagattagcaaattgtgtaaggtttatggagatgatgaggaaggtttagagaatgaggagagcgttcatgat- |
99 |
Q |
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| T |
3660078 |
ttgaagaatttgagggggagagttgagaagattagcaaattgtgtaaggtttatggagatgatgaggaaggtttagagaatgaggagagcgttcatgatg |
3659979 |
T |
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| Q |
100 |
-----------tatgatgacgatggagtaactgatgttgtggtcgctagaagggatgggaacaaaaatggtgtctttgttcaaaggcaagtaattcaacc |
188 |
Q |
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| T |
3659978 |
atgatgatgattatgatgacgatggagtaactgatgttgtggtcgctagaagggatgggaacaaaaatggtgtctttgttcaaaggcaagtaattcaacc |
3659879 |
T |
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| Q |
189 |
tagagtgaagaagagtgtgagatttgcagagaatggtaatgtttgtgaggtttatagcacaagaacttgtgaatcagatggaagttcctcaaatgatgac |
288 |
Q |
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| T |
3659878 |
tagagtgaagaagagtgtgagatttgcagagaatggtaatgtttgtgaggtttatagcacaagaacttgtgaatcggatggaagttcctcaaatgatgac |
3659779 |
T |
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| Q |
289 |
caaggcgaggttttggagaatagaaagtttgcagttgtagatgttgtggactcttatcagggtgttgaagatgacgaggaagtgctggtggaggacagtg |
388 |
Q |
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| T |
3659778 |
caaggcgaggttttggagaatagaaagtttgcagttgtagatgttgtggactcttctcagggtgttgaagatgacgaggaagtgctggtgggggacagtg |
3659679 |
T |
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| Q |
389 |
gaggatcaacacgtagtagcgatgacggagatatagtg |
426 |
Q |
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| T |
3659678 |
gaggatcaacacgtagtagcgatgacggagatatagtg |
3659641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 367 - 474
Target Start/End: Complemental strand, 3653449 - 3653342
Alignment:
| Q |
367 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
466 |
Q |
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| T |
3653449 |
gaagttctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagtagtttcaagcacaccaagagaagattctgttct |
3653350 |
T |
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| Q |
467 |
ctgctcca |
474 |
Q |
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| T |
3653349 |
ctgctcca |
3653342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 476
Target Start/End: Complemental strand, 3657452 - 3657343
Alignment:
| Q |
367 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
466 |
Q |
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| T |
3657452 |
gaagtgctggtggaggacggtgaaggatcaacgcgtagcagtggttatggagattgactgaaagagcagtttcaggtacatcatgagaagcttctgttct |
3657353 |
T |
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| Q |
467 |
ctgctccatt |
476 |
Q |
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| T |
3657352 |
cagctgcatt |
3657343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 476
Target Start/End: Complemental strand, 3659640 - 3659606
Alignment:
| Q |
442 |
gcacaccaagagaagattctgttctctgctccatt |
476 |
Q |
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| T |
3659640 |
gcacaccaagagaagattctgttctctgctccatt |
3659606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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