View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20244_low_8 (Length: 478)
Name: NF20244_low_8
Description: NF20244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20244_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 462
Target Start/End: Complemental strand, 35410292 - 35409851
Alignment:
| Q |
20 |
ctgcctataaagattggtggcgatttgacatggaaggtcttcctgccgatcttaaaagaaggtaaagaagatagtttccttcatcaaagttttctgtgca |
119 |
Q |
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| T |
35410292 |
ctgcctataaagattggtggcggtttgacatggaaggtcttcctgccgatcttaaaagaaggtaaagaagatagtttccttcatcaaagttttctgctca |
35410193 |
T |
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| Q |
120 |
atgagcttggttttacttgttctttcatttgttctttcactaagtgaagaagataagatctaactatttattctttcnnnnnnnncagaggtttggcggt |
219 |
Q |
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| T |
35410192 |
atgagcttggttttacttgttctttcatttgttctttcactaagtgaagaagataagatctaactatttattctttcttttttt-cagaggtttggcggt |
35410094 |
T |
|
| Q |
220 |
tccagatgccactcagccacatggcattagactacttattgaagattatccttatgcggctgatggactcctcatatggactagtatagagaagttggtc |
319 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35410093 |
tccagatgccactcggccacatggcattagactacttattgaagattatccttatgcggctgatggactcctcatatggtctagtatagagaagttggtc |
35409994 |
T |
|
| Q |
320 |
aggacctatgtgaaccattactacaaagatttgaatgccgtttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctg |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409993 |
aggacctatgtgaaccattactacaaagatttgaatgccatttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctg |
35409894 |
T |
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| Q |
420 |
atcataaaaatgctacctggtggcctaaactaaacacccctga |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409893 |
atcataaaaatgctacctggtggcctaaactaaacacccctga |
35409851 |
T |
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