View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20245_high_1 (Length: 922)
Name: NF20245_high_1
Description: NF20245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20245_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 254 - 906
Target Start/End: Complemental strand, 10459557 - 10458901
Alignment:
| Q |
254 |
gtaacacatttatagaggagaatttgaaatgcaatagaaaaaatcaattcaagaaatataatggtaactgcattgcatgcattttcaaaattagtgacac |
353 |
Q |
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| T |
10459557 |
gtaacacatttatagaggagaatttgaaatgcagtagaaaaaatcaattcaagaaatataatggtaactgcattgcatgcattttcaaaattagtgacac |
10459458 |
T |
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| Q |
354 |
ttataactttcataataacttgaaccgnnnnnnnnngaaagaataataacttgaatcat--gtccttttattcaatactgggaaaaatgtagggcaccat |
451 |
Q |
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| T |
10459457 |
ttataactttcataataacttgaacc-attttttttgaaagaataataacttgaatcatatgtccttttattcaatactgggaaaaatgtagggcaccat |
10459359 |
T |
|
| Q |
452 |
gtaaaaacctgcagacgaaatagtgaatccgaagggtcttctcag----gtcaacaggttatgtaggtgacttcttcggttatgtaatggactggacggt |
547 |
Q |
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| T |
10459358 |
gtaaaaacctgcagacgaaatagtgaatccgaaggatcttctcagttaggtcaacaggttatgcaggtgacttcttcggt-atgtaatggactggacggt |
10459260 |
T |
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| Q |
548 |
agcatacgattttggaattaaattttcaatccagtggtatccgcaactgactgcataggtactgttgtgaatcagaaattgatttgcttccttaattacg |
647 |
Q |
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| T |
10459259 |
agcatacgattttggaattaaattttcgatccagtggtatccgcaactgactgcataggtactgttgtgaatcagaaattgatttgcttccttaattacg |
10459160 |
T |
|
| Q |
648 |
tatattagtttgttcctaaaacaggctacacaaattataaattgttctgttctctttactatttaacgtaattacttgtataggagctagttagaagaat |
747 |
Q |
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| T |
10459159 |
tatattagtttgttcttaaaacaggctacacaaattataaattgttttgttctcattactatttaacgtaattacttgtataggagttagttagaagaat |
10459060 |
T |
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| Q |
748 |
aactaactggtagttagttgttaactctagtagtaagtcgcttgaggtgcaagtcatcaaaatagatataattaagcttgtgaagtttgttgtacatgct |
847 |
Q |
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| T |
10459059 |
aactaactggtagttagttgttaacactagtagtaagtcacttgaggtgcaagtcatcaaaatagatataaataagcttgtgaagtttgttgtacatgct |
10458960 |
T |
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| Q |
848 |
tcactacataatgcaataaaaattttgtgaaaaactctccataatattactctcataat |
906 |
Q |
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| T |
10458959 |
tcactacttaatgcaataaaaattttgtgaaaaactctccataatattactctcataat |
10458901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 10459791 - 10459629
Alignment:
| Q |
20 |
agaggaattgattcaaaaaagaaaattgaaaatacgagagaatttaaaatgggaagagtctttatagctgtagatttaatcaaggggttgcttacttgga |
119 |
Q |
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| T |
10459791 |
agaggaattgattcaaaaaagaaaattgaaaatacgagagaatttaaaatgagaagagtctttatagctgtaaatttaatcaaggggttgcttacttgga |
10459692 |
T |
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| Q |
120 |
gtaagttactagttaaattcctaaaaactaacttaaatctaatttcatcatacctaatattgg |
182 |
Q |
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| T |
10459691 |
gtaagttactagttaaattcctaaaaactaacttaaatctaatttcatcatacctaatattgg |
10459629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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