View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20245_high_3 (Length: 495)
Name: NF20245_high_3
Description: NF20245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20245_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 9 - 474
Target Start/End: Complemental strand, 8258403 - 8257938
Alignment:
| Q |
9 |
gaagaatatgtgagggaggaaccacgggtgatgtgcaaggaaataattgatacaaaaatctcaattatcacaacttgatgctatgtctctatcattctaa |
108 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8258403 |
gaagcatatgtgagtgaggaaccacgggtgatgtgcaaggaaataattgatacaaaaatctcaattatcacaacttgatgctatgtctctatcattctaa |
8258304 |
T |
|
| Q |
109 |
tcattataattctaatcacaactgtataaaaatattaagcaattaaagcaataataaatcatgacaatactgtgattgaggtctctcttactcattataa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8258303 |
tcattataattctaatcacaactgtataaaaatattaagcaattaaagcaataataaatcatgacaatactgtgagtgaggtctctcttactcattataa |
8258204 |
T |
|
| Q |
209 |
tttcagtatagaaaattgacacctcctnnnnnnnngcataaaaagagaaatgccagaaatgcttgccaccattgacactatagaaatcatcaaattaagt |
308 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8258203 |
tttcagtatagaaaattgacacctcctaaaaaaaagcataaaaagagaaatgccagaaatgcttaccaccattgacactatagaaatcatcaaattaagt |
8258104 |
T |
|
| Q |
309 |
atggaccaacaaattaatcagaattaaggtctatcagatcaattaagtaggaagttacatttcaatcactttca-ttttaatgtcaacagtaatatatga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8258103 |
atggaccaacaaattaatcagaattaaggtctatcagatcaattaagtaggaagttacatttcaatcactttcatttttaatgtcaacagtaatatatga |
8258004 |
T |
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| Q |
408 |
actataataattgaatagaccctgcatctggatataaatccaatcttcattttcattttcatgtata |
474 |
Q |
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| T |
8258003 |
actataataattgaatagaccctgcatctggatataaat-caatcttcattttcattttcatgtata |
8257938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 347 - 469
Target Start/End: Complemental strand, 8253591 - 8253470
Alignment:
| Q |
347 |
tcaattaagtaggaagttacatttcaatcactttcattttaatgtcaacagtaatatatgaactataataattgaatagaccctgcatctggatataaat |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
8253591 |
tcaattaagtaggaagttacatttcaatcactttcattttaatgtcaacagtaacatatgaactgtaataattgaatagaccctgcatctggatat-aat |
8253493 |
T |
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| Q |
447 |
ccaatcttcattttcattttcat |
469 |
Q |
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|||||||||||||||| ||||| |
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| T |
8253492 |
tcaatcttcattttcatattcat |
8253470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 8256087 - 8256020
Alignment:
| Q |
17 |
tgtgagggaggaaccacgggtgatgtgcaaggaaataattgatacaaaaatctcaattatcacaactt |
84 |
Q |
| |
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| T |
8256087 |
tgtgagtgaggaactaaggatgatatgcaaggaaataattgatacagaaatctcaattatcacaactt |
8256020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 8253728 - 8253692
Alignment:
| Q |
306 |
agtatggaccaacaaattaatcagaattaaggtctat |
342 |
Q |
| |
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|
| T |
8253728 |
agtatggaccaacaaattaatcagaattaaggcctat |
8253692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 8254006 - 8253970
Alignment:
| Q |
263 |
agaaatgcttgccaccattgacactatagaaatcatc |
299 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
8254006 |
agaaatgcttaccaccattgacactatagaaatcatc |
8253970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 8254090 - 8254051
Alignment:
| Q |
190 |
tctctcttactcattataatttcagtatagaaaattgaca |
229 |
Q |
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||||||||||||||||||||||||| ||||||||| |||| |
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| T |
8254090 |
tctctcttactcattataatttcagcatagaaaatggaca |
8254051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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