View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20245_high_4 (Length: 487)
Name: NF20245_high_4
Description: NF20245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20245_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 12517958 - 12518429
Alignment:
| Q |
1 |
ttgaaatcaatgtctgcatctcaatatttgcaaaaggtttttcattctataaatacctataaacttattagaaacaaagtactgaaaattgttatcttac |
100 |
Q |
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| T |
12517958 |
ttgaaatcaatgtctgcatctcaatattttcaaaaggtttttcattctataaatacctataaacttattagaaactaagtactgaaaattgttatcttac |
12518057 |
T |
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| Q |
101 |
cactttatctgtcaacctaataatttggtcaatagacaacacttcagacatgaaagcttcattcttaataatgacacctttgggttctccagttgttcca |
200 |
Q |
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| T |
12518058 |
cactttgtctgtcaacctaataatttggtcaatagacaacacttcagacatgaaagcttcattcttaataatgacacctttgggttctccagttgttcca |
12518157 |
T |
|
| Q |
201 |
cttgtgtacattattgtgcaaatgtcagtcttcttttttggtggtagatcgcaatccaaacttccctaaagaaagaaaggaagataactaagaagtgaga |
300 |
Q |
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| T |
12518158 |
cttgtgtacattattgtgcaaatgtcagtcttcttttttggtggtagatcgcaatccaaacttccctaaagaaagaaaggaagataactaagaagtgaga |
12518257 |
T |
|
| Q |
301 |
atgttgaatcaaaattgttcatgctccttatttgaatacaaataggcagatgaaaacatggtttatggttttcaattctgtccgcaaacgcaattgtagc |
400 |
Q |
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| T |
12518258 |
atgttgaatcaaaattgttcatgctccttatttgaatacaaataggcagatgaaaacatggtttatggttttaaattctgtccgcaaacgcaattgtagc |
12518357 |
T |
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| Q |
401 |
cacaatataaaagattttgtggtctccgcaacgacatcgcaaatgcgatataaagttttgtagcgtaactgg |
472 |
Q |
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| T |
12518358 |
cacaatataaaagattttgtggtctccgcaacgacatcgcaactgcgatataaagttttgtagcgtaactgg |
12518429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 123 - 267
Target Start/End: Original strand, 25748230 - 25748374
Alignment:
| Q |
123 |
atttggtcaatagacaacacttcagacatgaaagcttcattcttaataatgacacctttgggttctccagttgttccacttgtgtacattattgtgcaaa |
222 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||| ||||||||||||||||| |||||||| | |
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| T |
25748230 |
atttggtcaacggacaacacttcagacatgaaagcttcgttcttaataacgacaccttttggttcaccagtagttccacttgtgtacatgattgtgcaga |
25748329 |
T |
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| Q |
223 |
tgtcagtcttcttttttggtggtagatcgcaatccaaacttccct |
267 |
Q |
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| T |
25748330 |
tgttagtcttatttttcaatggtagatccaaatccagacttccct |
25748374 |
T |
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