View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20245_high_6 (Length: 342)
Name: NF20245_high_6
Description: NF20245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20245_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 50249936 - 50250260
Alignment:
| Q |
10 |
gcacagacaaaactgtcgatatctgtaattctgctaattcttatctagtagtgtgtgtgt------tgtttttgttagctttattcattgaatagtatca |
103 |
Q |
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| T |
50249936 |
gcacaaacaaaactgtcgatatctgtaattctgctaattcttatctagtagtgtgtgtgtgtgtattgttttggttagctttattcattgaatagtatca |
50250035 |
T |
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| Q |
104 |
agacttccagttttgttaaattattccacagctcatgttacaaatgcagtcaaacacatattagcatacaaatgctacccaagagttcataatatcaaga |
203 |
Q |
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| T |
50250036 |
agacttccagttttgttaaattattccacagctcatgttacaaatgcagtcaaacacatattagcatacaaatgctacccaagagttcataatatcaaga |
50250135 |
T |
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| Q |
204 |
aaacggtgaaggataatatttcaaaatcaaaacctcattctttaagttcttaaacttgatcattgtcagggagtgaaagcaaagactctttatacatgac |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50250136 |
aaacggtgaaggataatatttcaaaatcaaaacctcattcttcaagttcttaaacttgatcattgtcagggagtgaaagcaaagactctatatacatgac |
50250235 |
T |
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| Q |
304 |
cgcttggtatggcccgtcccagttg |
328 |
Q |
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| T |
50250236 |
cgcttggtatggcccgtcccagttg |
50250260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 50667081 - 50667041
Alignment:
| Q |
138 |
atgttacaaatgcagtcaaacacatattagcatacaaatgc |
178 |
Q |
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| T |
50667081 |
atgttataaatgcagtcaaacacatattatcctacaaatgc |
50667041 |
T |
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